Issues

• Address open Dependabot security alerts (19 high, 13 moderate, 2 low)

  Salk-Harnessing-Plants-Initiative/Ariadne#73 · Filter by author eberrigan opened on Aug 3, 2026

• Consider structured return type for analyze() API

  Salk-Harnessing-Plants-Initiative/Ariadne#71 · Filter by author eberrigan opened on Feb 17, 2026

• Refactor module-level logging.basicConfig() to entry point

  Salk-Harnessing-Plants-Initiative/Ariadne#70 · Filter by author eberrigan opened on Feb 17, 2026

• Random tree generation is not reproducible

  Salk-Harnessing-Plants-Initiative/Ariadne#69 · Filter by author eberrigan opened on Feb 16, 2026

• Analyzer GUI shows 'Not Responding' during analysis

  Salk-Harnessing-Plants-Initiative/Ariadne#67 · Filter by author eberrigan opened on Feb 12, 2026

• Add plot_correlation_heatmap() for objective correlations

  Salk-Harnessing-Plants-Initiative/Ariadne#66 · Filter by author eberrigan opened on Feb 11, 2026

• Add statistical analysis helper functions

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#65 · Filter by author eberrigan opened on Feb 11, 2026

• Add validate_graph() utility function

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#64 · Filter by author eberrigan opened on Feb 11, 2026

• Add plot_ternary() for Pareto coordinate visualization

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#63 · Filter by author eberrigan opened on Feb 11, 2026

• Add per-graph CSV output option to batch mode

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#62 · Filter by author eberrigan opened on Feb 10, 2026
  1

• Add batch analysis CLI (scriptable alternative to GUI)

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#61 · Filter by author eberrigan opened on Feb 10, 2026
  1

• Improve plot_all_3d() with α-coloring and annotations

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#60 · Filter by author eberrigan opened on Feb 10, 2026
  1

• Add plot_all_3d_interactive() for Plotly 3D visualization

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#59 · Filter by author eberrigan opened on Feb 10, 2026
  1

• Performance: point_dist uses pure Python loop instead of NumPy

  Salk-Harnessing-Plants-Initiative/Ariadne#58 · Filter by author eberrigan opened on Feb 6, 2026

• analyze() fails on synthetic test graphs with UnboundLocalError

  Salk-Harnessing-Plants-Initiative/Ariadne#57 · Filter by author eberrigan opened on Feb 4, 2026

• Document the epsilon indicator distance metric with literature references

  documentation
  Salk-Harnessing-Plants-Initiative/Ariadne#56 · Filter by author eberrigan opened on Feb 3, 2026

• Return (alpha, beta) instead of just alpha in 2D Pareto results

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#55 · Filter by author eberrigan opened on Feb 3, 2026

• Return (alpha, beta, gamma) instead of just (alpha, beta) in 3D Pareto results

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#54 · Filter by author eberrigan opened on Feb 3, 2026
  1

• 3D Pareto distance calculation lacks interpolation and returns misleading results

  bug
  Salk-Harnessing-Plants-Initiative/Ariadne#53 · Filter by author eberrigan opened on Feb 3, 2026
  1

• Add graph validation utility function

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#52 · Filter by author eberrigan opened on Feb 3, 2026

• Document edge weight requirements in pareto function docstrings

  documentation
  Salk-Harnessing-Plants-Initiative/Ariadne#51 · Filter by author eberrigan opened on Feb 3, 2026

• Add input validation to pareto functions for edge weights

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#50 · Filter by author eberrigan opened on Feb 2, 2026

• Add utility function to compute edge weights from node positions

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#49 · Filter by author eberrigan opened on Feb 2, 2026

• Refactor: Modular cost term architecture for extensible Pareto analysis

  Salk-Harnessing-Plants-Initiative/Ariadne#48 · Filter by author eberrigan opened on Jan 30, 2026

• Evaluate format_number() helper for consistent numeric display

  enhancement
  Salk-Harnessing-Plants-Initiative/Ariadne#47 · Filter by author eberrigan opened on Jan 28, 2026