Salk Harnessing Plants Initiative

Packages and infrastructure for bloom web application.

Electron-react application for cylinder scanning and upload to bloom.

Dockerized GAPIT3 pipeline for genome-wide association studies (GWAS) with support for multiple statistical models (BLINK, FarmCPU), multi-trait analysis, and HapMap genotype format. Designed for reproducible GWAS analysis in plants and other organisms.

Docker container for ChIP-seq and single-cell RNA-seq analysis on RunAI

ClearDepth Wall Root Tracker