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Oakley Brunt (oakleybrunt) wants to merge 19 commits into
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Add control for XIOS logging #397

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16d7fa4
Change all XIOS logging to 0
oakleybrunt Mar 25, 2026
2acdb44
Revert "Change all XIOS logging to 0"
oakleybrunt Mar 25, 2026
8229be5
Change all XIOS info_levels to var
oakleybrunt Mar 25, 2026
1a7ae80
Change name
oakleybrunt Mar 26, 2026
7d5a7ee
Add new task option to docs
oakleybrunt Mar 26, 2026
9696a26
Add tweak_iodef as default to all apps
oakleybrunt Mar 26, 2026
3e76a5b
Add missed apps
oakleybrunt Mar 26, 2026
5390344
Revert linear/integration-tests iodef files since not rose apps
oakleybrunt Mar 26, 2026
1810757
Merge branch 'main' into no-xios-logging
oakleybrunt Mar 26, 2026
471323c
Revert example iodef.xml files to static info_level
oakleybrunt Mar 27, 2026
5b0a1c7
Merge branch 'main' into no-xios-logging
oakleybrunt Apr 2, 2026
692cd66
Add switches
oakleybrunt Apr 2, 2026
21977ce
Change task-dict value type for xios_print_file to string
oakleybrunt Apr 7, 2026
5a669d0
Merge branch 'main' into no-xios-logging
oakleybrunt Apr 8, 2026
076fa4c
Add documentation to xios_print_file option
oakleybrunt Apr 9, 2026
be7acab
Merge branch 'main' into no-xios-logging
oakleybrunt Apr 9, 2026
a340057
Update documentation
oakleybrunt Apr 16, 2026
ecb279f
Merge branch 'main' into no-xios-logging
oakleybrunt Apr 16, 2026
6049a2e
Merge branch 'no-xios-logging' of github.com:oakleybrunt/LFRicApps in…
oakleybrunt Apr 16, 2026
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2 changes: 1 addition & 1 deletion applications/adjoint_tests/example/iodef.xml
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Expand Up @@ -113,7 +113,7 @@
<field id="ls_m_r" name="ls_m_r" long_name="LS values for m_r" standard_name="m_cr" unit="K" grid_ref="full_level_face_grid" />
<field id="ls_m_g" name="ls_m_g" long_name="LS values for m_g" standard_name="m_cr" unit="K" grid_ref="full_level_face_grid" />
<field id="ls_m_s" name="ls_m_s" long_name="LS values for m_s" standard_name="m_s" unit="K" grid_ref="full_level_face_grid" />

<field id="theta" name="theta" long_name="air_potential_temperature" standard_name="air_potential_temperature" unit="K" grid_ref="full_level_face_grid" />
<field id="m_v" name="m_v" long_name="m_v" unit="kg/kg" grid_ref="full_level_face_grid" />
<field id="m_cl" name="m_cl" long_name="m_cl" unit="kg/kg" grid_ref="full_level_face_grid" />
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2 changes: 1 addition & 1 deletion applications/jedi_lfric_tests/example/iodef.xml
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Expand Up @@ -120,7 +120,7 @@
<!--<field id="readls_h_u3" name="ls_u3" long_name="Upward wind derived from LS values of vertical flux (in computational space)" standard_name="upward_air_velocity" unit="m s-1" grid_ref="full_level_face_grid" />-->
<!--<field id="h_readls_h_u" name="h_readls_h_u" long_name="Horizontal flux (in computational space) derived from LS values of horizontal flux" standard_name="horizontal_flux" unit="m s-1" grid_ref="half_level_edge_grid" />-->
<!--<field id="v_readls_h_u" name="v_readls_h_u" long_name="Vertical flux (in computational space) derived from LS values of horizontal flux" standard_name="vertical_flux" unit="m s-1" grid_ref="full_level_face_grid" />-->

<field id="theta" name="theta" long_name="air_potential_temperature" standard_name="air_potential_temperature" unit="K" grid_ref="full_level_face_grid" />
<field id="m_v" name="m_v" long_name="m_v" unit="kg/kg" grid_ref="full_level_face_grid" />
<field id="m_cl" name="m_cl" long_name="m_cl" unit="kg/kg" grid_ref="full_level_face_grid" />
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8 changes: 8 additions & 0 deletions documentation/source/developer_guide/lfric_apps_rose_stem/adding_new_test.rst
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Expand Up @@ -195,6 +195,14 @@ The table below shows a list of possible entries for ``task_dict`` in the task d
- Int
- 0
- If ``use_xios`` is true and both this and ``xios_nodes`` are greater than 0, ``xios_server_mode`` will be true and this will set ``xios_server_ranks``. |br| Otherwise ``xios_server_mode=false`` and ``xios_server_ranks=0``.
* - xios_info_level
- Int
- 0
- Controls the level of information that XIOS logs. Used to set the ``info_level`` within xml files. When ``xios_info_level`` is greater than 1, logging is directed to ``xios_<client/server>_<rank>.out`` and ``xios_<client/server>_<rank>.err``, otherwise it is output to stdout and stderr (see ``xios_print_file`` for more details).
* - xios_print_file
- Str
- "false"
- Controls whether XIOS creates ``xios_<client/server>_<rank>.out`` and ``xios_<client/server>_<rank>.err`` files. When set to "false", logging is directed to stdout and stderr. If ``xios_info_level`` is greater than 1, ``xios_print_file`` will be set to "true".
* - example_dir
- Str
- "example"
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4 changes: 2 additions & 2 deletions rose-stem/app/adjoint_tests/file/iodef.xml
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Expand Up @@ -70,8 +70,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/gravity_wave/file/iodef.xml
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Expand Up @@ -108,8 +108,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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3 changes: 2 additions & 1 deletion rose-stem/app/gravity_wave/rose-app.conf
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@@ -1,7 +1,8 @@
meta=lfric-gravity_wave/vn3.1_t118

[command]
default=$LAUNCH_SCRIPT/launch-exe
default=$CORE_ROOT_DIR/bin/tweak_iodef; \
=$LAUNCH_SCRIPT/launch-exe

[env]
ENSEMBLE_MEMBER=0
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4 changes: 2 additions & 2 deletions rose-stem/app/gungho_model/file/iodef_climate.xml
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Expand Up @@ -46,8 +46,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/gungho_model/file/iodef_lam.xml
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Expand Up @@ -47,8 +47,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/gungho_model/file/iodef_nwp.xml
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Expand Up @@ -46,8 +46,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/jedi_forecast/file/iodef.xml
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Expand Up @@ -301,8 +301,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/jedi_forecast_pseudo/file/iodef.xml
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Expand Up @@ -89,8 +89,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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3 changes: 2 additions & 1 deletion rose-stem/app/jedi_forecast_pseudo/rose-app.conf
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@@ -1,7 +1,8 @@
meta=jedi_forecast_pseudo/vn3.1_t118

[command]
default=$LAUNCH_SCRIPT/launch-exe
default=$CORE_ROOT_DIR/bin/tweak_iodef; \
=$LAUNCH_SCRIPT/launch-exe

[env]
ENSEMBLE_MEMBER=0
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4 changes: 2 additions & 2 deletions rose-stem/app/jedi_id_tlm_tests/file/iodef.xml
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Expand Up @@ -448,8 +448,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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3 changes: 2 additions & 1 deletion rose-stem/app/jedi_id_tlm_tests/rose-app.conf
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meta=jedi_id_tlm_tests/vn3.1_t118

[command]
default=$LAUNCH_SCRIPT/launch-exe
default=$CORE_ROOT_DIR/bin/tweak_iodef; \
=$LAUNCH_SCRIPT/launch-exe

[env]
ENSEMBLE_MEMBER=0
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4 changes: 2 additions & 2 deletions rose-stem/app/jedi_lfric_tests/file/iodef.xml
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Expand Up @@ -352,8 +352,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/jedi_tlm_forecast_tl/file/iodef.xml
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Expand Up @@ -448,8 +448,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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3 changes: 2 additions & 1 deletion rose-stem/app/jedi_tlm_forecast_tl/rose-app.conf
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meta=jedi_tlm_forecast_tl/vn3.1_t118

[command]
default=$LAUNCH_SCRIPT/launch-exe
default=$CORE_ROOT_DIR/bin/tweak_iodef; \
=$LAUNCH_SCRIPT/launch-exe

[env]
ENSEMBLE_MEMBER=0
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4 changes: 2 additions & 2 deletions rose-stem/app/jedi_tlm_tests/file/iodef.xml
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Expand Up @@ -448,8 +448,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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3 changes: 2 additions & 1 deletion rose-stem/app/jedi_tlm_tests/rose-app.conf
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meta=jedi_tlm_tests/vn3.1_t118

[command]
default=$LAUNCH_SCRIPT/launch-exe
default=$CORE_ROOT_DIR/bin/tweak_iodef; \
=$LAUNCH_SCRIPT/launch-exe

[env]
ENSEMBLE_MEMBER=0
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4 changes: 2 additions & 2 deletions rose-stem/app/jules/file/iodef.xml
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Expand Up @@ -106,8 +106,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric2lfric/file/iodef.xml
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Expand Up @@ -67,8 +67,8 @@
<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >false</variable>
<variable id = "using_oasis" type = "bool">false</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
<variable id = "oasis_codes_id" type="string" >lfric2lfric lfric2lfric</variable>
</variable_group>
</variable_definition>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric2lfric/file/iodef_lbc.xml
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Expand Up @@ -76,8 +76,8 @@
<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >false</variable>
<variable id = "using_oasis" type = "bool">false</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
<variable id = "oasis_codes_id" type="string" >lfric2lfric lfric2lfric</variable>
</variable_group>
</variable_definition>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric2lfric/file/iodef_orography.xml
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Expand Up @@ -84,8 +84,8 @@
<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >false</variable>
<variable id = "using_oasis" type = "bool">false</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
<variable id = "oasis_codes_id" type="string" >lfric2lfric lfric2lfric</variable>
</variable_group>
</variable_definition>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric2lfric/file/iodef_ral.xml
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Expand Up @@ -392,8 +392,8 @@
<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >false</variable>
<variable id = "using_oasis" type = "bool">false</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
<variable id = "oasis_codes_id" type="string" >lfric2lfric lfric2lfric</variable>
</variable_group>
</variable_definition>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric2lfric/file/iodef_ral3.xml
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Expand Up @@ -168,8 +168,8 @@
<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >false</variable>
<variable id = "using_oasis" type = "bool">false</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
<variable id = "oasis_codes_id" type="string" >lfric2lfric lfric2lfric</variable>
</variable_group>
</variable_definition>
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3 changes: 2 additions & 1 deletion rose-stem/app/lfric2lfric/rose-app.conf
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@@ -1,7 +1,8 @@
meta=lfric-lfric2lfric/vn3.1_t118

[command]
default=$LAUNCH_SCRIPT/launch-exe
default=$CORE_ROOT_DIR/bin/tweak_iodef; \
=$LAUNCH_SCRIPT/launch-exe

[env]
ENSEMBLE_MEMBER=0
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric2um/file/iodef.xml
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Expand Up @@ -84,8 +84,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric2um/file/iodef_performance.xml
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Expand Up @@ -84,8 +84,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric2um/file/iodef_um_lam.xml
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Expand Up @@ -78,8 +78,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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3 changes: 2 additions & 1 deletion rose-stem/app/lfric2um/rose-app.conf
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@@ -1,5 +1,6 @@
[command]
default=$LAUNCH_SCRIPT/launch-exe
default=$CORE_ROOT_DIR/bin/tweak_iodef; \
=$LAUNCH_SCRIPT/launch-exe

[env]
ENSEMBLE_MEMBER=0
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric_atm/file/iodef_gal_clim.xml
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Expand Up @@ -98,8 +98,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric_atm/file/iodef_gal_clim_chem.xml
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Expand Up @@ -180,8 +180,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric_atm/file/iodef_gal_nwp.xml
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Expand Up @@ -102,8 +102,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric_atm/file/iodef_gal_nwp_coarse_aero.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -102,8 +102,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric_atm/file/iodef_gal_nwp_cycling.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -104,8 +104,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric_atm/file/iodef_gal_nwp_oper.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -103,8 +103,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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4 changes: 2 additions & 2 deletions rose-stem/app/lfric_atm/file/iodef_idealised.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -75,8 +75,8 @@

<variable_group id = "parameters" >
<variable id = "using_server" type = "bool" >true</variable>
<variable id = "info_level" type = "int" >50</variable>
<variable id = "print_file" type="bool">true</variable>
<variable id = "info_level" type = "int" >$XIOS_INFO_LEVEL</variable>
<variable id = "print_file" type="bool">$XIOS_PRINT_FILE</variable>
</variable_group>
</variable_definition>
</context>
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