DILiS-lab · vmeomeo · Aug 31, 2026 · Nov 25, 2025 · Dec 11, 2025 · Dec 16, 2025
diff --git a/examples/model_1_POSm4.ipynb b/examples/model_1_POSm4.ipynb
diff --git a/examples/model_2_complex_formation.ipynb b/examples/model_2_complex_formation.ipynb
diff --git a/examples/model_3_complex_formation_extend.ipynb b/examples/model_3_complex_formation_extend.ipynb
diff --git a/examples/model_4_MAPK-full.ipynb b/examples/model_4_MAPK-full.ipynb
diff --git a/examples/model_5_MAPK_reduced.ipynb b/examples/model_5_MAPK_reduced.ipynb
diff --git a/examples/model_6_calcium_oscillations.ipynb b/examples/model_6_calcium_oscillations.ipynb
diff --git a/examples/model_7_Repressilator.ipynb b/examples/model_7_Repressilator.ipynb
diff --git a/examples/plot_config.py b/examples/plot_config.py
@@ -0,0 +1,32 @@
+from matplotlib import rcParams
+
+rcParams.update({
+    "font.family": "serif",
+    "font.serif": ["Computer Modern Roman"],
+    "mathtext.fontset": "cm",
+    "text.usetex": True,  # requires LaTeX installation
+    "axes.linewidth": 1.2,
+    "axes.labelsize": 18,
+    "axes.titlesize": 18,
+    "xtick.labelsize": 16,
+    "ytick.labelsize": 16,
+    "legend.fontsize": 14,
+    "figure.dpi": 300,
+    "xtick.direction": "in",
+    "ytick.direction": "in",
+    "xtick.minor.visible": True,
+    "ytick.minor.visible": True,
+    "xtick.major.size": 6,
+    "xtick.minor.size": 3,
+    "ytick.major.size": 6,
+    "ytick.minor.size": 3,
+    "xtick.major.width": 1.0,
+    "ytick.major.width": 1.0,
+})
+
+colors = ['#EE7733', '#0077BB', '#33BBEE', '#EE3377', '#CC3311', '#009988', '#BBBBBB']
+colors_01 = ['#332288', '#88CCEE', '#44AA99', '#117733', '#999933', '#DDCC77', '#CC6677', '#882255', '#AA4499', '#DDDDDD']
+colors_02 = ['#332288', '#AA4499', '#DDCC77', '#117733', '#88CCEE', '#44AA99', '#999933', '#CC6677', '#882255', '#DDDDDD']
+colors_okabe_ito = ['#000000', '#CC79A7', '#0072B2', '#009E73','#E69F00', '#56B4E9', '#F0E442', '#D55E00']
+colors_okabe_ito_2 = ['#D55E00', '#0072B2', '#009E73','#E69F00', '#56B4E9', '#F0E442', '#D55E00', '#CC79A7','#000000']
+colors_paul_tol_bright = ['#4477AA', '#EE6677', '#228833', '#CCBB44', '#66CCEE', '#AA3377', '#BBBBBB']