Import loopdetect 2025 python examples - #1

Merged

vmeomeo merged 20 commits into

import-loopdetect-2025-python-examples

Aug 31, 2026

Commits on Nov 25, 2025

Update Python test
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260a28a

Commits on Dec 11, 2025

Update examples python
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0b212f7

Commits on Dec 16, 2025

Add models
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Commits on Jan 9, 2026

Update notebook for Python (add models and features) and MATLAB (rerun model POSm4 and run calcium oscillation model)
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Update Python ipynb with example for calcium oscilation parameters
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Update Python ipynb html
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Commits on Jan 14, 2026

Update notebooks for each models (1-3)
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Commits on Jan 15, 2026

Update Python, MATLAB and R notebooks (all results have not yet reproduced in R and MATLAB)
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Commits on Jan 21, 2026

Update notebooks for models (Python): Calcium oscillations and Reduced MAPK
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Commits on Jan 28, 2026

Update R reproduction (including pertubation + additional scripts) for model 1; Fix typo at 3.3 addtional function on extended loop summary for Python (Model 1)
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Commits on Jan 31, 2026

Fix bug
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Fix bug 2
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Commits on Feb 6, 2026

Remove test cells
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Commits on Feb 24, 2026

Fix minor stuffs and some typos
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add MAPK reproduction results (Python)
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Refine Python notebook for full MAPK model
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Commits on Apr 23, 2026

Update notebooks for more analysis
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Commits on May 6, 2026

Update figures and fix minor errors
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Commits on Aug 31, 2026

Import LoopDetect 2025 Python examples with history
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Import LoopDetect 2025 Python examples with history
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