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Remove model score from Nallo SNV score config #145

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Remove model score from Nallo SNV score config #145

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27 changes: 0 additions & 27 deletions nallo/rank_model/grch38_rank_model_snvs_-v1.0-.ini
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Original file line number Diff line number Diff line change
Expand Up @@ -845,33 +845,6 @@
#
# Variant call filter quality
#
[model_score]
category = variant_call_quality_filter
data_type = integer
description = Inheritance model score
field = INFO
info_key = ModelScore
record_rule = min
separators = ',',':',

[[not_reported]]
score = 0

[[low_qual]]
score = -5
lower = 0
upper = 10

[[medium_qual]]
score = -2
lower = 10
upper = 20

[[high_qual]]
score = 0
lower = 20
upper = 300

[filter]
category = variant_call_quality_filter
data_type = string
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