- Perform decoding of In Situ Sequencing data using Starfish.
- Utilize the computational resources of Google Colab for efficient processing.
- Run ISS decoding workflows easily without the need for complex local setup.
Before using this project, make sure you have the following prerequisites:
- Access to a Google account to use Google Colab.
To get started with In Situ Sequencing decoding using Starfish on Google Colab, follow these steps:
- Open the In Situ Sequencing Decoding Notebook in Google Colab.
- Sign in to your Google account if prompted.
- Follow the instructions provided in the notebook to run the cells sequentially.
- Customize the decoding parameters and workflow according to your specific ISS dataset.
- Monitor the progress and review the results generated by the decoding pipeline.