Stitch together TCR coding nucleotide sequences from V/J/CDR3 information

Jamie Heather | CCR @ MGH | 2023

The documentation for stitchr can be accessed at this link: https://jamieheather.github.io/stitchr/

Installation

It's best to install into a virtual environment (such as conda, uv, or venv) that has pip and Python already installed.

1. Clone this (forked) repository

$ git clone https://github.com/seshadrilab/stitchr.git

2. Move into the repository folder and install:

$ cd stitchr
$ pip install .

Running the Graphical User Interface (GUI)

With the environment activated, run this command from anywhere:

$ gui_stitchr