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saezlab
omnipath-build
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Build: a memory retry doubles memory and keeps the preparation workers
Developer checks
#19:
Commit
61d55fa
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jonsch1
1m 8s
parquet-migration
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1m 8s
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Resolver: coarse chemical cross-references no longer veto specific ids
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#18:
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0f39fe3
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Resolver: reuse results for observations that recur across batches
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#17:
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fae7a88
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55s
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parquet-migration
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Entrez hub: remember only gene2ensembl genes, as integers
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#16:
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Resolution gaps: KEGG genes, genes without Ensembl, ChEMBL and Human-GEM
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#15:
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1aee92e
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Resolution stats: count structure-only chemicals and pending microRNAs
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#14:
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39f51ac
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Build: write sorted outputs without a global sort
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#13:
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Build: leave memory headroom for the finalizer's DuckDB sorts
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#12:
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7a4ee33
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1m 13s
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Web: resources as sortable list rows with a details dialog
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#11:
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Web: keep the direction arrow on the first line of a relation phrase
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#10:
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Web: explorer list rows, aligned toolbar, Effect filters
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#9:
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51s
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Update pypath: fix ChEMBL activities parser wiring
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#8:
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49s
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Regression harness: name the reaction library
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#7:
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1m 11s
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Enhance core documentation with decisions and clarifications
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#6:
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Fix parquet-migration review findings, drop historical loader and spe…
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#5:
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Pin molecular form input coverage in Parquet build
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#4:
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Preserve gene references and molecular evidence across Parquet and do…
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#3:
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Record resource-limited nicesrv serving deployment
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#2:
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3m 35s
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Remove historical subset compatibility implementation
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#1:
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.
CI testing [unit testing]
#44:
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switch_to_new_schema
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.
Linting
#44:
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testing alternative approach (duckdb - parquet gold)
CI testing [unit testing]
#43:
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6m 22s
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testing alternative approach (duckdb - parquet gold)
Linting
#43:
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adapted gold (wip)
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#42:
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adapted gold (wip)
CI testing [unit testing]
#42:
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