[1.2.2] - 2022-03-20

Overview

Simple hotfix.

Changes

Fixes

• Hotfix SummaryData.save(). Missing attribute name was causing an error.

v1.2.1

[1.2.0] - 2020-06-18

Added

• utils.mapping.human_symbol_to_human_ens()

Changed

• anova no longer uses multiprocessing. This should decrease memory usage significantly.
• es_mu and es_sd now have index column name: "gene". This is required by CELLECT.
• mapping module naming and docs
  • utils.mapping.ens_human_to_symbol() --> human_ens_to_human_symbol()
  • utils.mapping.ens_mouse_to_ens_human() --> mouse_ens_to_human_ens()
  • utils.mapping.mgi_mouse_to_ens_mouse() --> mouse_symbol_to_mouse_ens()

v1.1.1

Changelog

[1.1.1] – 2020-03-09

Fixed

• FileNotFoundError for mapping functions.

v1.1.0

Overview

• Basic input parsing added.

• Input data now downcast to float32 to decrease memory load (this behaviour can be changed via the dtype argument). Downcasting only affects input data and SummaryData. Output is still float64.

• Various fixes, duplicate cell id's, mapping and updates to documentation.

Changelog

[1.1.0] – 2020-02-27

Added

• Function to parse input, utils.parse_input()

Changed

• ESObject casts input data to float32 to decrease memory load. This behaviour is controlled via the dtype argument.
• Updated README.
• Updated demo.
• Updated various docs.

Deprecated

Removed

Fixed

• Duplicate cell id's cause crash.
• Mapping.

Installation

See README.

We recommend installing CELLEX from pypi into a conda environment, i.e. pip install cellex

Public release

Core features are in place and the package is functional with minor, insignificant bugs (plotting).

New features are in develoment, as well as under-the-hood changes.

We plan to make CELLEX v1.0 available on the PyPi.