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Achievement: Pair ExtraordinaireAchievement: QuickdrawAchievement: StarstruckAchievement: YOLOAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

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  1. Nanostring-Biostats/SpatialDecon Nanostring-Biostats/SpatialDecon Public

    The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This algorithm also works in bulk expression profiling data.)

    R 43 10

  2. Nanostring-Biostats/InSituType Nanostring-Biostats/InSituType Public

    An R package for performing cell typing in SMI and other single cell data

    HTML 53 18

  3. Nanostring-Biostats/CosMx-Analysis-Scratch-Space Nanostring-Biostats/CosMx-Analysis-Scratch-Space Public

    This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of top…

    HTML 113 20

  4. Nanostring-Biostats/InSituCor Nanostring-Biostats/InSituCor Public

    InSituCor An R package for discovering modules of spatially correlated genes in spatial transcriptomics data.

    HTML 9

  5. Nanostring-Biostats/childhood-onset-lupus-nephritis-analyses Nanostring-Biostats/childhood-onset-lupus-nephritis-analyses Public

    Analyses from the manuscript, "Single cell spatial transcriptomic profiling of childhood-onset lupus nephritis reveals complex interactions between kidney stroma and infiltrating immune cells"

    R 3