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interpretation of bacteria pangenome graphs

Status: Open.

#123 In pangenome/seqwish;

· jianshu93 opened on Sep 19, 2024

please add a possibility to restrict the disk usage of seqwish

Status: Open.

#122 In pangenome/seqwish;

· subwaystation opened on Feb 29, 2024

Genome graph induced from wfmash+seqwish is still biased

Status: Open.

#121 In pangenome/seqwish;

· yihangs opened on Jan 25, 2024

Does seqwish supports output with nodes as single characters?

Status: Open.

#120 In pangenome/seqwish;

· YX-Xiang opened on Jan 5, 2024

abnormal alignments

Status: Open.

#109 In pangenome/seqwish;

· sdws1983 opened on Feb 20, 2023

Graph to Graph Alignment

Status: Open.

#108 In pangenome/seqwish;

· 8banzhuan opened on Nov 29, 2022

[FEATURE]: seqwish can emit GBZ format

Status: Open.

#91 In pangenome/seqwish;

· subwaystation opened on Jan 4, 2022

[FEATURE]: seqwish can handle agc compressed whole genome assemblies

Status: Open.

#90 In pangenome/seqwish;

· subwaystation opened on Jan 4, 2022

seqwish output with simulated data

Status: Open.

#69 In pangenome/seqwish;

· egoltsman opened on Dec 4, 2020

vg msga quite slow with 20 1Mb genomes

Status: Open.

#68 In pangenome/seqwish;

· bredelings opened on Nov 10, 2020

Error processsing large PAF files from minimap2

Status: Open.

#67 In pangenome/seqwish;

· brettChapman opened on Oct 5, 2020

Question: How to recover "colors" from the graph?

Status: Open.

#57 In pangenome/seqwish;

· phiweger opened on Jul 17, 2020