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    15 repositories

    • grr_seqpipe

      Public
      HTML
      •0•0•0•0•Updated Jul 15, 2026Jul 15, 2026

    • seqpipe.github.io

      Public
      HTML
      •0•0•0•0•Updated May 1, 2026May 1, 2026

    • deepsea-experiments

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•0•2•Updated Jul 25, 2024Jul 25, 2024

    • gpf-impala-udafs

      Public
      C++
      •0•0•0•0•Updated Jul 1, 2022Jul 1, 2022

    • docker-pmd-image

      Public
      PMD docker image
      Dockerfile
      •
      MIT License
      •6•0•0•0•Updated Nov 16, 2021Nov 16, 2021

    • RangeHTTPServer

      Public
      SimpleHTTPServer with support for Range requests
      Python
      •
      Apache License 2.0
      •33•0•0•0•Updated Aug 20, 2021Aug 20, 2021

    • SCclust

      Public
      Segmentation and Clustering of Single Cell Sequencing Copy Number Profiles
      R
      •
      MIT License
      •1•0•0•0•Updated Apr 28, 2021Apr 28, 2021

    • gpf_packaging

      Public
      Shell
      •0•0•0•0•Updated Apr 28, 2021Apr 28, 2021

    • syntfbs

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 6, 2021Apr 6, 2021

    • seqpipe-impala

      Public
      Shell
      •0•0•0•0•Updated Oct 23, 2020Oct 23, 2020

    • seqpipe-docker-impala

      Public
      Scripts to build a Docker image with Hadoop running in psedo-distributed mode
      Shell
      •
      Apache License 2.0
      •12•2•0•0•Updated Oct 22, 2020Oct 22, 2020

    • cyvcf2

      Public
      cython + htslib == fast VCF and BCF processing
      Python
      •
      MIT License
      •79•0•0•0•Updated Mar 20, 2020Mar 20, 2020

    • seqpipe-anaconda-base

      Public
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Aug 30, 2019Aug 30, 2019

    • sgains

      Public
      Sparse Genomic Analysis of Individual Nuclei by Sequencing
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 5, 2019Jun 5, 2019

    • SCGV

      Public
      SCGV is an interacive graphical tool for single-cell genomics data, with emphasis on single-cell genomics of cancer
      Python
      •
      MIT License
      •2•0•0•0•Updated Apr 23, 2019Apr 23, 2019
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