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    33 repositories

    • guided_tokenizer_benchmarking

      Public
      This repository has benchmarking and documentation of how to use guided tokenizer models.
      0•0•0•0•Updated Mar 23, 2026Mar 23, 2026

    • waveome

      Public
      This is a repository that contains a python package for automated longitudinal data analysis using Gaussian processes.
      Jupyter Notebook
      •
      MIT License
      •0•2•1•0•Updated Mar 10, 2026Mar 10, 2026

    • seqLens

      Public
      Jupyter Notebook
      •1•5•0•0•Updated Mar 2, 2026Mar 2, 2026

    • Cancer-Microbiome

      Public
      This repository includes a set of analyses and visualization for project entitled "Meta-analytic microbiome target discovery for immune checkpoint inhibitor res…
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 26, 2026Feb 26, 2026

    • massSight

      Public
      probablistic drift-aware optimal transport for cross-study LC-MS feature matching
      metabolomicsomics
      metabolomicsomics
      Python
      •
      MIT License
      •0•1•0•0•Updated Feb 24, 2026Feb 24, 2026

    • LODReview

      Public
      TeX
      •0•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • 16S_DB

      Public
      This repository hosts scripts to generate a clean database of 16S references from NCBI RefSeq and SILVA.
      R
      •0•0•0•0•Updated Nov 5, 2025Nov 5, 2025

    • deepbreaks

      Public
      deepBreaks , a computational method, aims to identify important changes in association with the phenotype of interest using multi-alignment sequencing data from…
      machine-learningpredictionsequencing-data
      machine-learningpredictionsequencing-dataphenotype-genotype-information
      Jupyter Notebook
      •3•12•0•0•Updated Oct 22, 2025Oct 22, 2025

    • resLens

      Public
      Python
      •1•2•0•0•Updated Jun 4, 2025Jun 4, 2025

    • cellSight

      Public
      R
      •
      MIT License
      •0•4•0•0•Updated May 23, 2025May 23, 2025

    • omeClust

      Public
      multi-resolution clustering of omics data
      Python
      •
      MIT License
      •5•14•0•1•Updated Apr 9, 2025Apr 9, 2025

    • Workshop

      Public
      omicsEye workshops
      R
      •
      MIT License
      •1•4•0•0•Updated Mar 24, 2025Mar 24, 2025

    • tokenizers

      Public
      💥 Fast State-of-the-Art Tokenizers optimized for Research and Production
      Rust
      •
      Apache License 2.0
      •1.1k•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • BGCLens

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Feb 6, 2025Feb 6, 2025

    • PREMIER

      Public
      Analysis for plasma branched-chain amino acid levels and cardiovascular disease risk factors: a longitudinal analysis of a lifestyle trial
      R
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • covid-19

      Public
      Scripts, data, and analysis of COVID-19
      R
      •0•2•0•0•Updated Nov 8, 2024Nov 8, 2024

    • omePath

      Public
      omePath: Omics Pathway Enrichment Analysis
      R
      •
      Other
      •4•2•1•1•Updated Nov 6, 2024Nov 6, 2024

    • massSightCafe

      Public
      R
      •0•0•0•0•Updated Oct 29, 2024Oct 29, 2024

    • omicsArt

      Public
      statistical analysis and visualization for omics data
      R
      •0•1•0•0•Updated Oct 2, 2024Oct 2, 2024

    • pubSight

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • btest

      Public
      btest: link, rank, and visualize associations among omics features across multi-omics datasets
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Jul 19, 2024Jul 19, 2024

    • rahlab-forum

      Public
      0•0•0•0•Updated May 10, 2024May 10, 2024

    • PUBH6859

      Public
      Jupyter Notebook
      •
      MIT License
      •5•1•0•2•Updated Mar 28, 2024Mar 28, 2024

    • breastmilk-stool-omics

      Public
      R
      •0•0•0•0•Updated Dec 7, 2023Dec 7, 2023

    • NF1-MEKi

      Public
      This repository includes a set of analyses and visualization for project entitled "The Impact of MEK-inhibitors on Neurofibromatosis Type I Associated Metabolis…
      R
      •
      MIT License
      •0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • hackensack_analysis

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 7, 2023Sep 7, 2023

    • Tweedieverse

      Public
      0•1•0•0•Updated Aug 8, 2023Aug 8, 2023

    • rare_disease_claims

      Public
      rare_disease
      R
      •
      MIT License
      •1•0•0•0•Updated Apr 6, 2023Apr 6, 2023

    • strainFocus

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 21, 2022Jul 21, 2022

    • COVID_Test_Time

      Public
      Modeling an dPredicting the efficient frequency of COVID-19 testing
      R
      •
      MIT License
      •0•0•0•0•Updated Feb 4, 2022Feb 4, 2022
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