Repositories list

• OncoLogics_paper

  Public
  Sup. Material & Report for OncoLogics paper

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 27, 2026Mar 27, 2026

• trafikk

  Public
  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• oris

  Public
  Python

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• celios

  Public
  Cell Line Omics integration for the DrugLogics and Trafikk pipelines

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• siflex

  Public
  Signal Flow Exploration for the DrugLogics and Trafikk pipelines

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• drexpa

  Public
  Drug Experimental Panel for DrugLogics and Trafikk

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• pydruglogics

  Public
  Construct, optimize Boolean models and perform in-silico perturbations of the models.

  genetic-algorithmblisshsa+ 3

  genetic-algorithmblisshsaboolean-modeldrug-target-interactionsdrug-synergy

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 29, 2025Oct 29, 2025

• abmlog

  Public
  A generator of all possible boolean models with link operators

  generatorattractorsboolean-model

  generatorattractorsboolean-model

  Java

  •

  MIT License

  •00 forks•11 star•00 issues•11 pull request•Updated Jul 12, 2025Jul 12, 2025

• AGS_synergies

  Public
  R

  •11 fork•00 stars•00 issues•00 pull requests•Updated Mar 12, 2024Mar 12, 2024

• ags-paper

  Public
  Sup. Material & Report for AGS paper

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 15, 2023Sep 15, 2023

• tfcheckpoint-umap

  Public
  UMAP-enabled 2D representation of the TFcheckpoint protein dataset

  umapgo-annotationtfcheckpoint

  umapgo-annotationtfcheckpoint

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 1, 2022Jun 1, 2022

• brf-bias

  Public
  Data analyses related to Truth Density bias in commonly used Boolean Regulatory Functions

  complexityparameterizationboolean-functions

  complexityparameterizationboolean-functions

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 17, 2022Feb 17, 2022

• synergy-tutorial

  Public
  Turorial for the DrugLogics software pipeline

  tutorialsoftware-tutorial

  tutorialsoftware-tutorial

  HTML

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Feb 9, 2022Feb 9, 2022

• druglogics-synergy

  Public
  Runs sequentially Gitsbe and Drabme, from model calibration to drug synergy prediction, all in one go

  Java

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Feb 8, 2022Feb 8, 2022

• druglogics-dep

  Public
  Miscellaneous dependencies repository

  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 8, 2022Feb 8, 2022

• druglogics-doc

  Public
  DrugLogics Software documentation

  documentationbookdowndruglogics-doc

  documentationbookdowndruglogics-doc

  TeX

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 15, 2021Nov 15, 2021

• drabme

  Public
  Drug Response Analysis to Boolean Model Ensembles

  drug-discoveryblisshsa+ 1

  drug-discoveryblisshsaboolean-model

  Java

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 15, 2021Nov 15, 2021

• gitsbe

  Public
  Generic Interactions To Specific Boolean Equations

  genetic-algorithmmodeling-toolparameterization+ 2

  genetic-algorithmmodeling-toolparameterizationboolean-modelboolean-functions

  Java

  •

  MIT License

  •00 forks•11 star•11 issue•00 pull requests•Updated Nov 15, 2021Nov 15, 2021

• gitsbe-model-analysis

  Public
  Ensemble boolean model analyses related to drug prediction performance

  modelingdata-analysislogical-modeling+ 1

  modelingdata-analysislogical-modelinggitsbe

  TeX

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 9, 2021Jun 9, 2021

• druglogics-roc

  Public
  Shiny app for generation of ROC curves

  rshinyroc-curve

  rshinyroc-curve

  R

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 15, 2021May 15, 2021

• cascade

  Public
  CASCADE - CAncer Signaling CAusality DatabasE

  databasecancerinteractions+ 1

  databasecancerinteractionscausal-networks

  MIT License

  •11 fork•11 star•00 issues•00 pull requests•Updated Apr 21, 2021Apr 21, 2021

• cascade-pan

  Public
  Pipeline simulations for higher-order drug combinations in the CASCADEs

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 30, 2020Dec 30, 2020

• bool-param-maps

  Public
  Boolean parameterization maps using UMAP

  randomforestumapparameterization+ 1

  randomforestumapparameterizationboolean-model

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 19, 2020Dec 19, 2020

• sintef-obs-synergies

  Public
  Synergy assesement of SINTEF data using Rbbt

  synergyblisshsa+ 1

  synergyblisshsasintef

  R

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 9, 2020Dec 9, 2020

• influential-nodes

  Public
  Influential node identification project

  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 19, 2020Jul 19, 2020