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    10 repositories

    • clindet

      Public
      A fully automated multi-omics data analysis pipeline based on Snakemake and singularity.
      Python
      •
      GNU General Public License v3.0
      •0•3•1•0•Updated Dec 27, 2025Dec 27, 2025

    • agmin

      Public
      A comprehensive data mining and visualization framework for tabular aging features in clinical and omics assays.
      R
      •
      Other
      •3•3•0•0•Updated Nov 15, 2024Nov 15, 2024

    • easyfuse

      Public
      Modified version for LDT: EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
      Python
      •
      GNU General Public License v3.0
      •16•0•0•0•Updated Apr 10, 2024Apr 10, 2024

    • bioextr

      Public
      Extract information from text or json data.
      Go
      •
      Other
      •1•4•0•0•Updated Apr 4, 2023Apr 4, 2023

    • bget

      Public
      Portable command-line tool to query bioinformatics APIs, data, databases and files.
      bioinformaticsdatabasespider
      bioinformaticsdatabasespider
      Go
      •
      Other
      •21•91•5•1•Updated Feb 23, 2023Feb 23, 2023

    • clinaml

      Public archive
      Robust prediction of the major gene expression profiling (GEP)-defined subgroups and the GEP-plus risk scores in AML.
      machine-learningbioinformaticsleukemia
      machine-learningbioinformaticsleukemia
      R
      •
      Other
      •2•1•1•0•Updated Dec 10, 2022Dec 10, 2022

    • bioctl

      Public
      A simple command line tool to facilitate the data analysis.
      Go
      •
      Other
      •0•6•0•0•Updated Oct 22, 2020Oct 22, 2020

    • chromedp

      Public
      A faster, simpler way to drive browsers supporting the Chrome DevTools Protocol.
      Go
      •
      MIT License
      •865•0•0•0•Updated Oct 22, 2020Oct 22, 2020

    • rctl

      Public
      A set of command line tools based on R and JavaScript.
      workflowrngs
      workflowrngscommand-line-tool
      JavaScript
      •
      MIT License
      •3•17•0•0•Updated Apr 21, 2020Apr 21, 2020

    • anor

      Public
      anor: an annotation and visualization system based on R and Shiny framework
      rannotationsannovar
      rannotationsannovar
      R
      •
      Other
      •15•33•4•0•Updated Apr 20, 2020Apr 20, 2020
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