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    • odx-rs

      Public
      Rust
      0000Updated Apr 19, 2026Apr 19, 2026
    • JavaScript
      MIT License
      0136Updated Apr 18, 2026Apr 18, 2026
    • babs

      Public
      BIDS App Bootstrap (BABS)
      Python
      MIT License
      712467Updated Apr 17, 2026Apr 17, 2026
    • Code and Data Associated with the Meisler et al. Analysis of ABCD DWI (ABCC Release 3.1.0)
      Jupyter Notebook
      MIT License
      0000Updated Apr 17, 2026Apr 17, 2026
    • aslprep

      Public
      Preprocessing of arterial spin labeling (ASL) data
      Python
      Other
      2157456Updated Apr 16, 2026Apr 16, 2026
    • qsiprep

      Public
      Preprocessing of diffusion MRI
      Python
      BSD 3-Clause "New" or "Revised" License
      6217910011Updated Apr 15, 2026Apr 15, 2026
    • qsirecon

      Public
      Reconstruction of preprocessed q-space images (dMRI)
      Python
      BSD 3-Clause "New" or "Revised" License
      1721753Updated Apr 15, 2026Apr 15, 2026
    • Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.
      Python
      BSD 3-Clause "New" or "Revised" License
      00124Updated Apr 14, 2026Apr 14, 2026
    • Data resource that combines longitudinal multi-modal imaging data with rich clinical and cognitive phenotyping
      Jupyter Notebook
      MIT License
      0001Updated Apr 13, 2026Apr 13, 2026
    • shafiei_timescale

      Public
      Code and documentation supporting Shafiei et al., 2026, "Mapping developmental patterns of intrinsic timescale"
      Python
      MIT License
      0000Updated Apr 13, 2026Apr 13, 2026
    • Jupyter Notebook
      MIT License
      0000Updated Apr 12, 2026Apr 12, 2026
    • xcp_d

      Public
      Post-processing of fMRIPrep, NiBabies, and HCP outputs
      Python
      BSD 3-Clause "New" or "Revised" License
      38109419Updated Apr 10, 2026Apr 10, 2026
    • ModelArray: an R package for statistical analysis of fixel-wise data and beyond
      R
      Other
      47295Updated Apr 10, 2026Apr 10, 2026
    • AI2D

      Public
      Website showcasing AI2D datasets
      Jupyter Notebook
      MIT License
      0000Updated Apr 7, 2026Apr 7, 2026
    • A tool for ingressing outputs from other processing pipelines (e.g., HCP, UKB) for use in QSIRecon.
      Python
      MIT License
      1010Updated Apr 6, 2026Apr 6, 2026
    • Documentation for PennLINC
      HTML
      MIT License
      175160Updated Apr 2, 2026Apr 2, 2026
    • bdt

      Public
      BIDS Derivatives Transformer
      Python
      Apache License 2.0
      0024Updated Apr 1, 2026Apr 1, 2026
    • Code for curating and processing the MEBOLD-TRT dataset.
      Python
      MIT License
      0010Updated Mar 31, 2026Mar 31, 2026
    • ConFixel

      Public archive
      Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.
      Python
      BSD 3-Clause "New" or "Revised" License
      2100Updated Mar 24, 2026Mar 24, 2026
    • mrtrix3

      Public
      MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractogra…
      C++
      Mozilla Public License 2.0
      198000Updated Mar 20, 2026Mar 20, 2026
    • ANTs

      Public
      Advanced Normalization Tools (ANTs)
      C++
      Apache License 2.0
      403000Updated Mar 20, 2026Mar 20, 2026
    • Shell
      0000Updated Mar 20, 2026Mar 20, 2026
    • ITK

      Public
      Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scienti…
      C++
      Apache License 2.0
      724000Updated Mar 18, 2026Mar 18, 2026
    • nibs

      Public
      Myelin mapping test-retest study
      Jupyter Notebook
      MIT License
      0130Updated Mar 16, 2026Mar 16, 2026
    • CuBIDS

      Public
      Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
      Python
      MIT License
      13304710Updated Mar 16, 2026Mar 16, 2026
    • trekker

      Public
      dMRI based fiber tracking using parallel transport tractography
      C++
      BSD 3-Clause "New" or "Revised" License
      16000Updated Mar 10, 2026Mar 10, 2026
    • nibrary

      Public
      nibrary is an evolving collection of functions designed to support research in computational neuroimaging across various imaging modalities for developing new m…
      C++
      BSD 3-Clause "New" or "Revised" License
      3000Updated Mar 10, 2026Mar 10, 2026
    • Curation and analysis code for the Affective Instability (PAFIN) dataset.
      HTML
      MIT License
      0000Updated Mar 4, 2026Mar 4, 2026
    • Builds a base docker image for xcp-d
      Dockerfile
      2240Updated Feb 20, 2026Feb 20, 2026
    • Builds a base docker image for xcp-d
      Dockerfile
      BSD 3-Clause "New" or "Revised" License
      0030Updated Feb 10, 2026Feb 10, 2026
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