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@PennLINC Lifespan Informatics and Neuroimaging Center

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    217 repositories

    • odx-rs

      Public
      Rust
      •0•0•0•0•Updated Apr 19, 2026Apr 19, 2026

    • sypres-docs

      Public
      JavaScript
      •
      MIT License
      •0•1•3•6•Updated Apr 18, 2026Apr 18, 2026

    • babs

      Public
      BIDS App Bootstrap (BABS)
      Python
      •
      MIT License
      •7•12•46•7•Updated Apr 17, 2026Apr 17, 2026

    • Meisler_ABCD_dMRI

      Public
      Code and Data Associated with the Meisler et al. Analysis of ABCD DWI (ABCC Release 3.1.0)
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 17, 2026Apr 17, 2026

    • aslprep

      Public
      Preprocessing of arterial spin labeling (ASL) data
      aslcbfbids-apps
      aslcbfbids-apps
      Python
      •
      Other
      •21•57•45•6•Updated Apr 16, 2026Apr 16, 2026

    • qsiprep

      Public
      Preprocessing of diffusion MRI
      pipelinesdistortion-correctionbids
      pipelinesdistortion-correctionbidsmotion-correctiondiffusion-mridenoising-images
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •62•179•100•11•Updated Apr 15, 2026Apr 15, 2026

    • qsirecon

      Public
      Reconstruction of preprocessed q-space images (dMRI)
      mribidsdwi
      mribidsdwidiffusion-mribids-formatdmribidsappbids-apps
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•21•75•3•Updated Apr 15, 2026Apr 15, 2026

    • ModelArrayIO

      Public
      Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•12•4•Updated Apr 14, 2026Apr 14, 2026

    • transdiagnostic_executive_function

      Public
      Data resource that combines longitudinal multi-modal imaging data with rich clinical and cognitive phenotyping
      Jupyter Notebook
      •
      MIT License
      •0•0•0•1•Updated Apr 13, 2026Apr 13, 2026

    • shafiei_timescale

      Public
      Code and documentation supporting Shafiei et al., 2026, "Mapping developmental patterns of intrinsic timescale"
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 13, 2026Apr 13, 2026

    • grmpy_opendata

      Public
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 12, 2026Apr 12, 2026

    • xcp_d

      Public
      Post-processing of fMRIPrep, NiBabies, and HCP outputs
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •38•109•41•9•Updated Apr 10, 2026Apr 10, 2026

    • ModelArray

      Public
      ModelArray: an R package for statistical analysis of fixel-wise data and beyond
      rbig-datastatistical-analysis
      rbig-datastatistical-analysisneuroimaging
      R
      •
      Other
      •4•7•29•5•Updated Apr 10, 2026Apr 10, 2026

    • AI2D

      Public
      Website showcasing AI2D datasets
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 7, 2026Apr 7, 2026

    • ingress2qsirecon

      Public
      A tool for ingressing outputs from other processing pipelines (e.g., HCP, UKB) for use in QSIRecon.
      dwimri-reconstruction
      dwimri-reconstruction
      Python
      •
      MIT License
      •1•0•1•0•Updated Apr 6, 2026Apr 6, 2026

    • PennLINC.github.io

      Public
      Documentation for PennLINC
      HTML
      •
      MIT License
      •17•5•16•0•Updated Apr 2, 2026Apr 2, 2026

    • bdt

      Public
      BIDS Derivatives Transformer
      Python
      •
      Apache License 2.0
      •0•0•2•4•Updated Apr 1, 2026Apr 1, 2026

    • mebold-trt

      Public
      Code for curating and processing the MEBOLD-TRT dataset.
      Python
      •
      MIT License
      •0•0•1•0•Updated Mar 31, 2026Mar 31, 2026

    • ConFixel

      Public archive
      Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.
      pythonneuroimaging
      pythonneuroimaging
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•1•0•0•Updated Mar 24, 2026Mar 24, 2026

    • mrtrix3

      Public
      MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractogra…
      C++
      •
      Mozilla Public License 2.0
      •198•0•0•0•Updated Mar 20, 2026Mar 20, 2026

    • ANTs

      Public
      Advanced Normalization Tools (ANTs)
      C++
      •
      Apache License 2.0
      •403•0•0•0•Updated Mar 20, 2026Mar 20, 2026

    • mrtrix-trx-integration

      Public
      Shell
      •0•0•0•0•Updated Mar 20, 2026Mar 20, 2026

    • ITK

      Public
      Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scienti…
      C++
      •
      Apache License 2.0
      •724•0•0•0•Updated Mar 18, 2026Mar 18, 2026

    • nibs

      Public
      Myelin mapping test-retest study
      Jupyter Notebook
      •
      MIT License
      •0•1•3•0•Updated Mar 16, 2026Mar 16, 2026

    • CuBIDS

      Public
      Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.
      neuroscienceneuroimagingneuroinformatics
      neuroscienceneuroimagingneuroinformaticspython-packagedata-curationneuroscience-methodsneuroimaging-data-sciencedata-organization
      Python
      •
      MIT License
      •13•30•47•10•Updated Mar 16, 2026Mar 16, 2026

    • trekker

      Public
      dMRI based fiber tracking using parallel transport tractography
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •16•0•0•0•Updated Mar 10, 2026Mar 10, 2026

    • nibrary

      Public
      nibrary is an evolving collection of functions designed to support research in computational neuroimaging across various imaging modalities for developing new m…
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •3•0•0•0•Updated Mar 10, 2026Mar 10, 2026

    • affective-instability

      Public
      Curation and analysis code for the Affective Instability (PAFIN) dataset.
      HTML
      •
      MIT License
      •0•0•0•0•Updated Mar 4, 2026Mar 4, 2026

    • xcpd_build

      Public
      Builds a base docker image for xcp-d
      Dockerfile
      •2•2•4•0•Updated Feb 20, 2026Feb 20, 2026

    • aslprep_build

      Public
      Builds a base docker image for xcp-d
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•3•0•Updated Feb 10, 2026Feb 10, 2026
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