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23 repositories

OutEffHop
Public
[ICML 2024] Outlier-Efficient Hopfield Layers for Large Transformer-Based Models
transformer outliers attention
transformer outliers attention attention-mechanism outlier-removal outlier hopfield-neural-network ptq outlier-treatment modern-hopfield-networks
Python
•
MIT License
•5•23•1•0•Updated Mar 30, 2026Mar 30, 2026
algo_emu
Public
In‑Context Algorithm Emulation in Fixed‑Weight Transformers
transformer attention-mechanism universal-approximation
transformer attention-mechanism universal-approximation in-context-learning foundation-model algorithm-emulation in-context-algorithm-emulation algorithm-swapping
Python
•
Apache License 2.0
•1•3•0•0•Updated Mar 10, 2026Mar 10, 2026
BiSHop
Public
[ICML 2024] BiSHop: Bi-Directional Cellular Learning for Tabular Data with Generalized Sparse Modern Hopfield Model
hopfield-network tabular hopfield
hopfield-network tabular hopfield tabular-methods tabular-model modern-hopfield-networks modern-hopfield-model tabular-learn generalized-sparse-modern-hopfield sparse-hopfield
Python
•
Apache License 2.0
•4•12•0•0•Updated Mar 2, 2026Mar 2, 2026
state_space_duality
Public
On Structured State-Space Duality
state-space transformer attention-mechanism
state-space transformer attention-mechanism mamba state-space-model masked-attention structured-state-space-models
Python
•
Apache License 2.0
•1•4•0•0•Updated Jan 27, 2026Jan 27, 2026
DNABERT_S
Public
[ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
dna embedding dna-embedding
dna embedding dna-embedding
Python
•30•126•3•1•Updated Jan 1, 2026Jan 1, 2026
DNABERT_2
Public
[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome
transcription-factors genome splice
transcription-factors genome splice dna dataset promoters promoter transcription-factor-binding language-model genome-analysis
Shell
•
Apache License 2.0
•95•468•50•0•Updated Jan 1, 2026Jan 1, 2026
flow_kl
Public
On Flow Matching KL Divergence
Python
•
MIT License
•1•4•0•0•Updated Nov 10, 2025Nov 10, 2025
hallucination
Public
Are Hallucinations Bad Estimations?
Python
•
Apache License 2.0
•1•2•0•0•Updated Oct 3, 2025Oct 3, 2025
GenoArmory
Public
GenoArmory: A Unified Evaluation Framework for Adversarial Attacks on Genomic Foundation Models
visualization benchmark dna
visualization benchmark dna safety vulnerability defence quantization dna-sequences adversarial-attacks adversarial-training
Python
•
MIT License
•5•38•0•0•Updated Sep 20, 2025Sep 20, 2025
XLLM
Public
[USENIX Security 2025] Mind the Inconspicuous: Revealing the Hidden Weakness in Aligned LLMs’ Ethical Boundaries
jailbreak automatic safety
jailbreak automatic safety eos llm llm-safety
Python
•
MIT License
•6•2•0•0•Updated Jul 11, 2025Jul 11, 2025
GERM
Public
[ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.
bioinformatics cpu genomics
bioinformatics cpu genomics dna outliers low-latency lora quantization hopfield-network dna-sequences
Python
•
MIT License
•3•18•0•0•Updated Jun 19, 2025Jun 19, 2025
DAPA
Public
Decoupled Alignment for Robust Plug-and-Play Adaptation
alignment safety knowledge-distillation
alignment safety knowledge-distillation delta-debugging multi-modality memory-editing llms
Python
•
Apache License 2.0
•1•1•0•0•Updated Jun 11, 2025Jun 11, 2025
SMUTF
Public
[Information System] SMUTF: Schema Matching Using Generative Tags and Hybrid Features
data-science feature-extraction lightgbm
data-science feature-extraction lightgbm schema-matching data-cleaning hxl tag-generation lightgbm-models lightgbm-classifier t5-model
Python
•
Apache License 2.0
•13•4•0•0•Updated May 4, 2025May 4, 2025
UAP_Attention
Public
Universal Approximation with Softmax Attention
Python
•1•2•0•0•Updated Apr 26, 2025Apr 26, 2025
icdl
Public
Code for "In-Context Deep Learning via Transformer Models"
in-context-learning in-context-gradient-descent in-context-deep-learning
in-context-learning in-context-gradient-descent in-context-deep-learning in-context-approximation
1•2•0•0•Updated Apr 11, 2025Apr 11, 2025
genomeocean
Public
The official implementation of GenomeOcean.
Python
•
Other
•11•2•0•0•Updated Mar 28, 2025Mar 28, 2025
Chain-of-Actions
Public
[ICLR 2025] Chain-of-Action: Faithful and Multimodal Question Answering through Large Language Models
qa tools retrieval
qa tools retrieval reasoning llm chain-of-thought iclr2025
Python
•
Apache License 2.0
•4•7•0•0•Updated Feb 22, 2025Feb 22, 2025
Optimal-Hopfield-Memory
Public
Python
•
MIT License
•1•1•0•0•Updated Oct 16, 2024Oct 16, 2024
UHop
Public
[ICML 2024] Uniform Memory Retrieval with Larger Capacity for Modern Hopfield Models
hopfield-network associative-memory hopfield
hopfield-network associative-memory hopfield memory-capacity network-capacity modern-hopfield-networks modern-hopfield-model sparse-hopfield hopfield-model generalized-sparse-hopfield
Python
•
Apache License 2.0
•1•9•0•0•Updated Jun 3, 2024Jun 3, 2024
SparseModernHopfield
Public
[NeurIPS 2023] On Sparse Modern Hopfield Model
transformer attention hopfield
transformer attention hopfield modern-hopfield-networks modern-hopfield-model
Python
•
MIT License
•11•56•0•0•Updated Mar 26, 2024Mar 26, 2024
STanHop
Public
[ICLR 2024] STanHop: Sparse Tandem Hopfield Model for Memory-Enhanced Time Series Prediction
transformer attention-mechanism hopfield
transformer attention-mechanism hopfield time-series-prediction time-series-forecasting modern-hopfield-networks modern-hopfield-model
Python
•
MIT License
•3•25•1•0•Updated Jan 18, 2024Jan 18, 2024
NonparametricHopfield
Public
Nonparametric Modern Hopfield Models
efficient-transformers efficient-attention modern-hopfield-networks
efficient-transformers efficient-attention modern-hopfield-networks modern-hopfield-model efficient-hopfield-models efficient-hopfield-networks
Jupyter Notebook
•
Other
•1•10•0•0•Updated Jan 8, 2024Jan 8, 2024
DNABERT
Public
[Bioinformatics] DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome
dna
dna
Python
•
Apache License 2.0
•177•7•0•0•Updated Oct 26, 2023Oct 26, 2023

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MAGICS-LAB

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23 repositories

OutEffHop

algo_emu

BiSHop

state_space_duality

DNABERT_S

DNABERT_2

flow_kl

hallucination

GenoArmory

XLLM

GERM

DAPA

SMUTF

UAP_Attention

icdl

genomeocean

Chain-of-Actions

Optimal-Hopfield-Memory

UHop

SparseModernHopfield

STanHop

NonparametricHopfield

DNABERT

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Repositories list

23 repositories