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    59 repositories

    • elephant

      Public
      Elephant is the ElectroPhysiology Analysis Toolkit
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •96•9•23•0•Updated Apr 27, 2026Apr 27, 2026

    • beNNch-plot

      Public
      Plotting styles for beNNch
      Python
      •
      GNU General Public License v3.0
      •6•1•2•4•Updated Apr 20, 2026Apr 20, 2026

    • microcircuit-PD14-model

      Public
      Cortical microcircuit model (Potjans & Diesmann, 2014)
      Jupyter Notebook
      •7•6•9•2•Updated Mar 20, 2026Mar 20, 2026

    • gather-metadata

      Public
      Collector for generic metadata of HPC execution environment focussed on benchmarking
      Python
      •
      GNU General Public License v3.0
      •0•0•1•4•Updated Mar 18, 2026Mar 18, 2026

    • beNNch-models

      Public
      PyNEST models for performance benchmarking with beNNch
      Python
      •
      GNU General Public License v2.0
      •9•3•0•1•Updated Mar 13, 2026Mar 13, 2026

    • python-neo

      Public
      Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •271•3•30•0•Updated Mar 5, 2026Mar 5, 2026

    • SPADE_surrogates

      Public
      Repository containing code necessary to reproduce the results of Stella, A., Bouss, P., Palm, G., & Grün, S. (2021). Generating surrogates for significance esti…
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•1•0•0•Updated Jul 18, 2025Jul 18, 2025

    • Builder

      Public
      Compile scripts for local installs of software packages
      Shell
      •
      GNU General Public License v3.0
      •3•2•11•3•Updated Jul 9, 2025Jul 9, 2025

    • mesocircuit-model

      Public
      Mesocircuit Model
      Python
      •
      Other
      •3•5•27•4•Updated Jun 12, 2025Jun 12, 2025

    • alpaca

      Public
      Automated Lightweight Provenance Capture
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•2•0•1•Updated Jun 2, 2025Jun 2, 2025

    • neuroephys_analysis_ontology

      Public
      Neuroelectrophysiology Analysis Ontology (NEAO)
      Creative Commons Attribution 4.0 International
      •0•2•3•0•Updated May 23, 2025May 23, 2025

    • NLP-preprocessing

      Public
      Jupyter Notebook
      •1•0•0•0•Updated May 15, 2025May 15, 2025

    • multi-area-model

      Public
      A large-scale spiking model of the vision-related areas of macaque cortex.
      neural-networksimulationcomputational-neuroscience
      neural-networksimulationcomputational-neuroscienceconnectivitycerebral-cortexfunctional-connectivityprimatesfull-scalemulti-areapredictive-connectomics
      Python
      •
      Other
      •54•78•6•0•Updated Mar 21, 2025Mar 21, 2025

    • human-multi-area-model

      Public
      Python
      •
      GNU General Public License v3.0
      •2•5•0•1•Updated Mar 19, 2025Mar 19, 2025

    • metadata-archivist

      Public
      Lightweight framework for processing heterogeneous metadata files into a unified structured output
      Python
      •
      GNU General Public License v3.0
      •1•2•4•0•Updated Jan 27, 2025Jan 27, 2025

    • neao_use_case

      Public
      Repository containing the code necessary to reproduce the results of the Neuroelectrophysiology Analysis Ontology manuscript
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Dec 6, 2024Dec 6, 2024

    • beaverdam

      Public
      Build, Explore, and Visualize Experimental Data and Metadata
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •1•5•6•0•Updated Nov 28, 2024Nov 28, 2024

    • eligibility_propagation

      Public
      Python
      •
      Other
      •38•3•0•0•Updated Nov 28, 2024Nov 28, 2024

    • viziphant

      Public
      Visualization of electrophysiological data from Elephant
      visualizationpythonelectrophysiology
      visualizationpythonelectrophysiologyneurophysiology
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •7•25•3•3•Updated Oct 21, 2024Oct 21, 2024

    • networkunit

      Public
      A SciUnit library for validation testing of spiking neural network models.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •6•16•9•2•Updated Aug 1, 2024Aug 1, 2024

    • SAS

      Public
      Assessing the similarity of real matrices with arbitrary shape.
      Python
      •
      GNU General Public License v3.0
      •0•6•0•0•Updated May 3, 2024May 3, 2024

    • ThaCoMac

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Mar 20, 2024Mar 20, 2024

    • alpaca_use_case

      Public
      Repository containing the code necessary to reproduce the results of the Alpaca toolbox manuscript.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

    • hybridLFPy

      Public
      Biophysics-based prediction of LFPs from point-neuron networks
      Python
      •
      GNU General Public License v3.0
      •11•10•6•2•Updated Feb 8, 2024Feb 8, 2024

    • sciunit

      Public
      A Python framework for test-driven validation of scientific models.
      Python
      •
      MIT License
      •33•0•0•0•Updated Dec 26, 2023Dec 26, 2023

    • python-odmltables

      Public
      An interface to convert odML structues to and from table-like representations, such as spreadsheets
      format-converterspreadsheetshacktoberfest
      format-converterspreadsheetshacktoberfestmetadata-managementodml
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •11•5•22•4•Updated Dec 5, 2023Dec 5, 2023

    • MAM2EBRAINS

      Public archive
      A large-scale spiking model of the vision-related areas of macaque cortex.
      Python
      •
      Other
      •54•0•0•0•Updated Oct 20, 2023Oct 20, 2023

    • beNNch

      Public
      Modular performance benchmarking framework for neural network simulations
      Python
      •
      GNU General Public License v3.0
      •6•7•3•0•Updated Oct 18, 2023Oct 18, 2023

    • Python-Module-of-the-Week

      Public
      Jupyter Notebook
      •
      MIT License
      •8•14•0•0•Updated Oct 13, 2023Oct 13, 2023

    • nnmt

      Public
      Neuronal Network Meanfield Toolbox - official documentation: https://nnmt.readthedocs.io
      Python
      •
      GNU General Public License v3.0
      •8•15•16•2•Updated Sep 6, 2023Sep 6, 2023
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