Repositories list

• 2026_visium_hd_methodology

  Public
  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 21, 2026Aug 21, 2026

• nebula_de

  Public
  a less painful way of running DE analysis with nebula on OSC or DORA

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 5, 2026Aug 5, 2026

• 2026_cnmf_pipeline

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated May 20, 2026May 20, 2026

• 2025_nri_plasma_pilot

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• Integration_work

  Public
  (Anjali)

  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 19, 2025Dec 19, 2025

• 2023_sn_processing_pipeline

  Public
  Repository with single nuclei RNAseq initial (QC + integration) data analysis pipeline

  R

  •33 forks•00 stars•00 issues•00 pull requests•Updated Oct 22, 2025Oct 22, 2025

• 2024_align_demult

  Public
  Pipeline to align 10x multiome fastq files and demultiplex

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 11, 2025Sep 11, 2025

• 2025_crosstalk_manuscript

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 28, 2025Jun 28, 2025

• 2025_multiome_processing_pipeline

  Public
  Repository with 10X Multiome (GEX+ATAC) initial (QC + integration) data analysis pipeline

  R

  •33 forks•00 stars•00 issues•00 pull requests•Updated Jan 27, 2025Jan 27, 2025

• 2024_grubman_reprocessing

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jun 5, 2024Jun 5, 2024

• 2024_docker_single_cell

  Public
  Docker image for single cell analysis

  Dockerfile

  •

  GNU General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 12, 2024Feb 12, 2024

• Cross-omics-Integration

  Public
  The analysis code used for "Brain cross-omics integration in Alzheimer's disease" manuscript

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 10, 2024Jan 10, 2024

• parietal-snRNAseq

  Public
  R

  •00 forks•22 stars•00 issues•00 pull requests•Updated Feb 10, 2023Feb 10, 2023

• Metabolomics

  Public
  Scripts used to QC and analyze metabolomics data

  R

  •00 forks•22 stars•00 issues•00 pull requests•Updated Apr 13, 2022Apr 13, 2022

• RNA-Seq-Pipeline

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 19, 2022Mar 19, 2022

• Transcriptomics-Browser

  Public
  R

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 8, 2021Dec 8, 2021

• SV-Hotspot

  Public
  R

  •55 forks•00 stars•00 issues•00 pull requests•Updated May 12, 2021May 12, 2021