Repositories list

• PD_lg_predictor_analysis

  Public
  PD logistic regression predictor model analysis (without UK Biobank data and history commit data)

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 4, 2025Nov 4, 2025

• AD_multi_tissue_analysis

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 12, 2025Jul 12, 2025

• AD_Multimorbid3D

  Public
  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 1, 2025Jul 1, 2025

• PD_multi_tissue_MR

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 17, 2025Feb 17, 2025

• Parkinsons_disease_genetics

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 5, 2024Jan 5, 2024

• asthma_multimorbidities

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated May 30, 2023May 30, 2023

• khoo_et_al_somatic

  Public
  Analysis of the Connection between Germline and Somatic Processes in Lung Cancer, using a GRN and PPIN

  00 forks•00 stars•00 issues•00 pull requests•Updated May 4, 2023May 4, 2023

• multimorbid3D

  Public
  Python

  •55 forks•00 stars•00 issues•00 pull requests•Updated Apr 17, 2023Apr 17, 2023

• genetic-regulation-in-copd

  Public
  De novo discovery of traits co-occurring with chronic obstructive pulmonary disease.

  gene-regulationgwas-catalogeqtl+ 4

  gene-regulationgwas-catalogeqtlcomorbiditiescopdcodes3dmultimorbid3d

  HTML

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Mar 27, 2023Mar 27, 2023

• khoo_et_al_germline

  Public
  Analysis of the Germline Regulatory Connections in Lung Cancer, using CoDeS3D and a pathway analysis

  11 fork•00 stars•00 issues•00 pull requests•Updated Mar 14, 2023Mar 14, 2023

• PPI-network-analysis

  Public
  Clustering and centrality analysis on PPI network

  communityppinetwork-module+ 2

  communityppinetwork-modulelouvain-algorithmnetwork-centrality

  Python

  •22 forks•33 stars•00 issues•00 pull requests•Updated Nov 22, 2022Nov 22, 2022

• alcohol-dependence

  Public
  Analysis of tissue-specific regulatory impacts of alcohol dependence-associated SNPs.

  hi-c3d-genomeeqtl+ 3

  hi-c3d-genomeeqtlgene-regulatory-networkalcohol-dependenceadh-genes

  HTML

  •22 forks•44 stars•00 issues•00 pull requests•Updated Nov 22, 2022Nov 22, 2022

• psychiatric-and-cognitive-multimorbidities

  Public
  Analysis of regulatory impacts of GWAS SNPs associated with psychiatric disorders and cognitive functioning.

  hi-cdepressioncognition+ 9

  hi-cdepressioncognition3d-genomeeqtladhdschizophreniaanxietygene-regulatory-networkmulti-morbidity+ 2

  HTML

  •33 forks•88 stars•00 issues•00 pull requests•Updated Nov 22, 2022Nov 22, 2022

• adh-and-aldh-regulatory-networks

  Public
  Association analysis of ADH and ALDH gene regulatory interactions with GWAS traits.

  gene-regulationcognitioneqtl+ 4

  gene-regulationcognitioneqtlalcohol-dependenceadh-genesgtex-resourcesaldh-genes

  HTML

  •

  MIT License

  •22 forks•11 star•00 issues•00 pull requests•Updated Nov 22, 2022Nov 22, 2022

• ACE2-regulatory-network

  Public
  Analysis of host regulatory networks that could be impacted upon infection with the Covid-19 virus

  hi-ceqtlcovid-19+ 4

  hi-ceqtlcovid-19sars-cov-2ace2acetazolamideards

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 22, 2022Nov 22, 2022

• blood-metabolites-regulation

  Public
  bloodgene-regulationhi-c+ 3

  bloodgene-regulationhi-c3d-genomemetabolomeeqtl-mapping

  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Nov 22, 2022Nov 22, 2022

• codes3d-v1

  Public
  Python

  •

  MIT License

  •11 fork•11 star•00 issues•11 pull request•Updated Nov 22, 2022Nov 22, 2022

• multimorbidity-atlas

  Public
  Pipeline to investigate multimorbidity of complex traits/phenotypes by integrating chromatin interaction and expression quantitative trait loci data.

  hi-c3d-genomeeqtl+ 2

  hi-c3d-genomeeqtlcomplex-traitsmulti-morbidity

  HTML

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 22, 2022Nov 22, 2022

• ml_copd

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 22, 2022Nov 22, 2022

• codes3d

  Public
  Python

  •

  MIT License

  •22 forks•22 stars•00 issues•00 pull requests•Updated Oct 19, 2022Oct 19, 2022

• query_disgenet

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 16, 2022Sep 16, 2022

• mpra-pipeline

  Public
  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 2, 2022Aug 2, 2022

• pubtate

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 17, 2022Jun 17, 2022

• 85_SNPs_and_2k_ld_SNP_predictor_models

  Public
  The predictor models created from the 85 SNPs and there 2k ld related SNPs

  Python

  •11 fork•11 star•00 issues•00 pull requests•Updated Jun 7, 2022Jun 7, 2022

• NAFLD-comorbidity-analysis

  Public
  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Mar 18, 2022Mar 18, 2022

• NAFLD-multimorbidities

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 18, 2022Mar 18, 2022

• asthma-drug-response

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 17, 2022Feb 17, 2022

• acne

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 15, 2021Nov 15, 2021

• genetic-regulation-in-asd

  Public
  Analysis of regulatory impacts of autism-associated SNPs on biological pathways in the fetal and adult cortex.

  snpsgene-regulationgwas-catalog+ 4

  snpsgene-regulationgwas-catalogeqtlasdautism-spectrum-disordergtex-resources

  HTML

  •

  MIT License

  •11 fork•99 stars•00 issues•00 pull requests•Updated Sep 20, 2021Sep 20, 2021

• T1D_logistic_lasso_predictor

  Public
  Type 1 diabetes logistic lasso predictor

  Python

  •22 forks•11 star•00 issues•00 pull requests•Updated Sep 6, 2021Sep 6, 2021