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Background lists for GSEA, analysis direction, overlap target number#27

Merged

carcruz merged 10 commits into

mainopentargets/pathways-api:mainfrom

feat-gmt-background-lists-backend-onlyopentargets/pathways-api:feat-gmt-background-lists-backend-onlyCopy head branch name to clipboard

Feb 4, 2026

Conversation Commits10 (10)Checks Files changed

Merged

Background lists for GSEA, analysis direction, overlap target number#27
carcruz merged 10 commits into
mainfrom
feat-gmt-background-lists-backend-only

Commits

Commits on Jan 27, 2026

fix: gsea.py json format
polrus
committed
fix: gsea - JSON-safe values
polrus
committed
feat: generate per-GMT background gene lists and run on startup
polrus
committed
feat(gsea): merge library background genes into input with zero scores
polrus
committed
fix(ui): update routing and API proxy
polrus
committed
fix: handle NaN values for JSON serialization
polrus
committed
feat(logging): enhance logging for router registration and add analysis direction to GSEA endpoint
polrus
committed
refactor(gsea): rename missing_stats to input_overlap
polrus
committed
refactor(router): simplify router registration
polrus
committed
refactor(router): clean up temporary file handling and remove commented code
polrus
committed

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