Feat/add optional filter params - #828

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krbe9202 wants to merge 16 commits into

nf-core:devfrom

ClinicalGenomicsGBG:feat/add-optional-filter-params

Commits on Apr 21, 2026

feat(cgg): add SV filtering, HTT filter, disable CNVnator, add filter_sv_to_manta
xtruka
committed
fix(call_snv_sentieon): swap ch_genome_fai and ch_genome_fasta to alphabetical order
xtruka
committed

Commits on Apr 24, 2026

Merge upstream/dev, re-enable CNVnator, update variable names
xtruka
committed
Fix orphaned ENSEMBLVEP_SV reference outside skip_vep_sv block
xtruka
committed
disable CNVnator: container missing C headers (assert.h not found, exit 140) ROOT's CINT interpreter requires system C headers at runtime which are absent from the conda env in the current containe…
xtruka
committed
add optional params for SV/SNV filtering and calling
xtruka
committed

Commits on Apr 25, 2026

Commits on Apr 26, 2026

fix: make BCFTOOLS_DECOMPRESS_MERGE prefix conditional on filter_expansionhunter_htt
xtruka
committed

Commits on Apr 27, 2026

docs: update CHANGELOG and output.md, update nf-test snapshot
xtruka
committed

Commits on Apr 28, 2026

Commits on Apr 30, 2026

Merge branch 'dev' into feat/add-optional-filter-params
krbe9202
authored

Commits on May 15, 2026

Merge branch 'dev' into feat/add-optional-filter-params
krbe9202
authored