Release v2.3.0#117

Merged

charles-plessy merged 46 commits into

Jun 11, 2026

Commits on May 25, 2026

Commits on May 27, 2026

Commits on May 29, 2026

Commits on May 30, 2026

Use CRAM 3.0 to be consistent with maf-convert.
charles-plessy
committed

Commits on Jun 2, 2026

Generate 4 channels at once.

charles-plessy
and
Joon-Klaps
authored
Use the 4 channels generated with multiMap.

charles-plessy
and
Joon-Klaps
authored
Use the 4 channels generated with multiMap.

charles-plessy
and
Joon-Klaps
authored
Use the same bgzipped genome channel everywhere

charles-plessy
and
Joon-Klaps
authored
prek run --show-diff-on-failure --color=always --all-files
charles-plessy
committed
Simplify one if/else statement in just one if.

charles-plessy
and
Joon-Klaps
committed
Use nf-core's version of FASTA_BGZIP_INDEX_DICT_SAMTOOLS…
charles-plessy
committed
Merge pull request #114 from nf-core/multi-cram-issue-60
charles-plessy
authored

Commits on Jun 3, 2026