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Rebased to fix merge conflict. I'll merge this on Monday if there are no comments. |
victorlin
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Ah, thanks for flagging. Will squash them.
Workflow changes to support running the workflows with the `nextstrain run` command. Declares compatibility for `nextstrain run` for the ingest workflow, but does not declare compatibility for phylo and nextclade workflows because they are incomplete in this guide. Co-authored-by: Thomas Sibley <tsibley@fredhutch.org>
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Description of proposed changes
Workflow changes to support running the workflows with the
nextstrain runcommand.Declares compatibility for
nextstrain runin thenextstrain-pathogen.yamlfor the ingest workflow. Does not declare compatibility for phylo and nextclade workflows because they are incomplete in this guide.Related issue(s)
nextstrain/public#1
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