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Parameter --use_paired_reads not detecting paired end reads

Status: Open.

#48 In ncbi/SKESA;

· SamaZYX opened on Sep 2, 2025

Question: all_variants vs selected_variants in saute output with a redudant set of references.

Status: Open.

#47 In ncbi/SKESA;

· sivico26 opened on Jul 17, 2025

GFA wrong integer value for KC tag

Status: Open.

#46 In ncbi/SKESA;

· vepain opened on Dec 20, 2024

The description of the contigs file header format broken in README

Status: Open.

#44 In ncbi/SKESA;

· samuell opened on Oct 11, 2024

SAUTE paired and unpaired input

Status: Open.

#43 In ncbi/SKESA;

· Adamtaranto opened on Aug 9, 2024

Saute assembly for human WGS HLA region

Status: Open.

#42 In ncbi/SKESA;

· atongsa opened on Jan 23, 2024

Killed job

Status: Open.

#41 In ncbi/SKESA;

· Kanyerezi30 opened on Dec 9, 2023

Help needed in understanding Saute output

Status: Open.

#40 In ncbi/SKESA;

· swarnalilouha opened on Jul 16, 2023

Version confusion due to SAUTE

Status: Open.

#39 In ncbi/SKESA;

· tseemann opened on Jun 17, 2023

Unicode error

Status: Open.

#36 In ncbi/SKESA;

· kalilamali opened on Nov 23, 2022

Circularization undocumented

Status: Open.

#35 In ncbi/SKESA;

· lskatz opened on Nov 17, 2022

SKESA / SAUTE Conda package update

Status: Open.

#32 In ncbi/SKESA;

· mycowx opened on Sep 7, 2021