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Medaka inference crash (Exit 135) on high-latency filesystems when pyabpoa is missing

bug

Status: Open.

#584 In nanoporetech/medaka;

· vaishnavpvarma opened on Mar 27, 2026

Need help choosing which Medaka model to use

enhancement

Status: Open.

#582 In nanoporetech/medaka;

· M-Passier opened on Jan 13, 2026

RuntimeError: cuDNN error: CUDNN_STATUS_NOT_SUPPORTED. This error may appear if you passed in a non-contiguous input.

bug

Status: Open.

#580 In nanoporetech/medaka;

· Sumsarium opened on Dec 15, 2025

Minimap2 parameter -x

enhancement

Status: Open.

#578 In nanoporetech/medaka;

· Emkago opened on Dec 5, 2025

Don't strip FASTA header info

enhancement

Status: Open.

#575 In nanoporetech/medaka;

· mbhall88 opened on Nov 24, 2025

medaka_consensus sometimes hallucinating random homopolymers

bug

Status: Open.

#572 In nanoporetech/medaka;

· novigit opened on Sep 2, 2025

Low Accuracy in HUMAN dataset

bug

Status: Open.

#567 In nanoporetech/medaka;

· liyewen521 opened on Jul 14, 2025

medaka consensus stuck at or after Loading sample files

bug

Status: Open.

#563 In nanoporetech/medaka;

· canerbagci opened on Jun 3, 2025

torch.OutOfMemoryError: CUDA out of memory.

bug

Status: Open.

#561 In nanoporetech/medaka;

· byeollee opened on Apr 23, 2025

Using medaka for generating many consensus sequences from small bamfiles

enhancement

Status: Open.

#558 In nanoporetech/medaka;

· samberry19 opened on Apr 15, 2025

Difference between r941_e81_sup_g514 and r941_min_sup_g507

enhancement

Status: Open.

#556 In nanoporetech/medaka;

· valery-shap opened on Mar 6, 2025

Medaka fails to accurately call deletions

bug

Status: Open.

#555 In nanoporetech/medaka;

· BertVanm opened on Feb 28, 2025