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1. JaBbA JaBbA Public

   MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.

   R 59 27

2. gGnome gGnome Public

   R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework

   R 42 24

3. fishHook fishHook Public

   R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after correcting for genomic covariates.

   R 32 10

4. gGnome.js gGnome.js Public

   JavaScript 26 4

5. gTrack gTrack Public

   R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

   R 18 12

6. chromunity chromunity Public

   Discovery of communities in Pore-C concatemers

   R 16 6