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Pull requests: liaoherui/AccuSNV

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Pull requests list

Fix amino acid annotations for genes on reverse strand (v2)
#31 opened Jul 17, 2026 by alexcritschristoph Contributor Loading…
Fix strand-aware AA lookup and diverse-call handling in SNV annotation modules codex
#22 opened Apr 24, 2026 by liaoherui Owner Loading…
Fix reverse-strand amino-acid mutation labeling in SNV annotations codex
#21 opened Apr 22, 2026 by liaoherui Owner Loading…
Update gus_helper_functions.py
#20 opened Mar 24, 2026 by alyssah7 Contributor Loading…
Optimize performance: vectorize arrays, batch I/O, and add progress reporting
#19 opened Mar 8, 2026 by liaoherui Owner • Draft
SNV pipeline: fix broadcasting, optimize MutQual, add tree limit, and refactor TSV/HTML output codex
#18 opened Mar 8, 2026 by liaoherui Owner Loading…
Optimize SNP tree generation and SNV pipeline performance; improve TSV/PHYLIP/HTML outputs and add --max_snp_trees flag codex
#17 opened Mar 8, 2026 by liaoherui Owner Loading…
Optimize AccuSNV performance: vectorize t-test loop and eliminate O(n…
#16 opened Mar 6, 2026 by liaoherui Owner Loading…
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