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78 Commits
plots
plots
 
 
CompareDiffAlignedTC.m
CompareDiffAlignedTC.m
 
 
D2GaussFunction_TFpSF_test.m
D2GaussFunction_TFpSF_test.m
 
 
Intan_digital_movement_HW.m
Intan_digital_movement_HW.m
 
 
README.md
README.md
 
 
align_ori_tc.m
align_ori_tc.m
 
 
align_sf_tc.m
align_sf_tc.m
 
 
align_size_tc.m
align_size_tc.m
 
 
align_speed_tc.m
align_speed_tc.m
 
 
align_tf_tc.m
align_tf_tc.m
 
 
aligned_tc_plot_comparisons.m
aligned_tc_plot_comparisons.m
 
 
analyze_2p_expt.m
analyze_2p_expt.m
 
 
analyze_opto_expt.m
analyze_opto_expt.m
 
 
binarizeCTb.m
binarizeCTb.m
 
 
byExp_comparisons.m
byExp_comparisons.m
 
 
calculateOMIall.m
calculateOMIall.m
 
 
checkforNaN.m
checkforNaN.m
 
 
clean_osi_dsi_vals.m
clean_osi_dsi_vals.m
 
 
fdr_bh.m
fdr_bh.m
 
 
find_well_fit.m
find_well_fit.m
 
 
fit_2D_Elip_Gauss.m
fit_2D_Elip_Gauss.m
 
 
fit_2D_Elip_Gauss_ks.m
fit_2D_Elip_Gauss_ks.m
 
 
fit_sum_vonMises.m
fit_sum_vonMises.m
 
 
get2PStimResponse.m
get2PStimResponse.m
 
 
get2PUSResponse.m
get2PUSResponse.m
 
 
getCTbImage.m
getCTbImage.m
 
 
getStimTimes.m
getStimTimes.m
 
 
get_CV_DirCV.m
get_CV_DirCV.m
 
 
get_OSI_DSI.m
get_OSI_DSI.m
 
 
get_any_sig.m
get_any_sig.m
 
 
get_blank_trials.m
get_blank_trials.m
 
 
get_by_field_mean_median.m
get_by_field_mean_median.m
 
 
get_cell_stat.m
get_cell_stat.m
 
 
get_exp_data.m
get_exp_data.m
 
 
get_mean_ori_mat.m
get_mean_ori_mat.m
 
 
get_mean_size_mat.m
get_mean_size_mat.m
 
 
get_mean_speed_mat.m
get_mean_speed_mat.m
 
 
get_off_ori_params.m
get_off_ori_params.m
 
 
get_off_size_params.m
get_off_size_params.m
 
 
get_off_speed_params.m
get_off_speed_params.m
 
 
get_opto_shuffled.m
get_opto_shuffled.m
 
 
get_ori_fits.m
get_ori_fits.m
 
 
get_ori_pref.m
get_ori_pref.m
 
 
get_peak_sig.m
get_peak_sig.m
 
 
get_same_cell_activity.m
get_same_cell_activity.m
 
 
get_speed_fits_ks.m
get_speed_fits_ks.m
 
 
get_stim_trials.m
get_stim_trials.m
 
 
get_us_blank.m
get_us_blank.m
 
 
getdFoF.m
getdFoF.m
 
 
getdFoF_ks.m
getdFoF_ks.m
 
 
getlbKWpval.m
getlbKWpval.m
 
 
getreproducibility.m
getreproducibility.m
 
 
getreproducibilitySF_TF.m
getreproducibilitySF_TF.m
 
 
getsbxfs.m
getsbxfs.m
 
 
getstimconds.m
getstimconds.m
 
 
guess_eps.m
guess_eps.m
 
 
guess_sf_tf_bw.m
guess_sf_tf_bw.m
 
 
irradiance_plot.m
irradiance_plot.m
 
 
loadsbx.m
loadsbx.m
 
 
loadspike2n.m
loadspike2n.m
 
 
loadsuite2p.m
loadsuite2p.m
 
 
looper.m
looper.m
 
 
normalize_mat.m
normalize_mat.m
 
 
org_trial_id.m
org_trial_id.m
 
 
plot_aligned_peaks.m
plot_aligned_peaks.m
 
 
plot_aligned_size_peaks.m
plot_aligned_size_peaks.m
 
 
plot_cell_tuning_curves.m
plot_cell_tuning_curves.m
 
 
plot_compare_aligned_tc.m
plot_compare_aligned_tc.m
 
 
plot_cumulative_peaks.m
plot_cumulative_peaks.m
 
 
plot_individual_size_tuning_curves.m
plot_individual_size_tuning_curves.m
 
 
plot_opto_compare.m
plot_opto_compare.m
 
 
plot_opto_order.m
plot_opto_order.m
 
 
plot_ori_fwhm.m
plot_ori_fwhm.m
 
 
plot_osi_dsi_scatter.m
plot_osi_dsi_scatter.m
 
 
plot_peak_off_amp_scatter.m
plot_peak_off_amp_scatter.m
 
 
plot_sf_tf_pref_pdf.m
plot_sf_tf_pref_pdf.m
 
 
plot_sf_tf_sigma_pdf.m
plot_sf_tf_sigma_pdf.m
 
 
plot_speed_pref_pdfs.m
plot_speed_pref_pdfs.m
 
 
post_osi_dsi.m
post_osi_dsi.m
 
 
rPO_table.m
rPO_table.m
 
 
sbx_trialinfo.m
sbx_trialinfo.m
 
 
sbx_trialinfo_new.m
sbx_trialinfo_new.m
 
 
test_rPO_significance.m
test_rPO_significance.m
 
 
test_rPO_significanceSF_TF.m
test_rPO_significanceSF_TF.m
 
 
ts_ODP.m
ts_ODP.m
 
 
ts_byFieldanalysis.m
ts_byFieldanalysis.m
 
 
ts_rPO_stat_pooled.m
ts_rPO_stat_pooled.m
 
 

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2Panalyzer

2photon data analysis code written in matlab for Callaway Lab Begin with analyze_opto_expt

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2photon data analysis code written in matlab for Callaway Lab

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