Code to reproduce the figures and results from Priebe et al. 2026, Genome Biology. DOI: https://doi.org/10.1186/s13059-026-03971-w
To setup the required environment for figure production, run bash init.sh. We also require the benchmarking data, which is saved in serialized form in a google bucket. It can be downloaded and untared by running bash load_data.sh. Figures can then be generated with their corresponding python scripts in ./manuscript_figures which will generate figures in named directories within ./manuscript_figures/final_figures/.