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1. bovreproseq bovreproseq Public

   Targeted amplicon sequencing for Bovine Reproductive Pathogens

   Nextflow 1

2. influenzaa_typing influenzaa_typing Public

   Pipeline for Influenza A Typing using Oxford Nanopore sequencing

   Shell 1

3. ont_targseq ont_targseq Public

   Pipeline for reference based consensus generation for amplicon sequencing

   Nextflow 1 2

4. salmonella_serotyping salmonella_serotyping Public

   Salmonella enterica whole genome assembly and serotyping using SISTR

   Nextflow 1

5. strepsuis_typing strepsuis_typing Public

   Whole genome sequenicng and analysis of Streptocoocus suis isolates

   Nextflow 1

6. sanger_targseq sanger_targseq Public

   Pipeline for analysis of Sanger sequencing results

   Nextflow 1