Restrict bcftools consensus to region-filtered VCFs - #62
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Summary
This PR speeds up VCF-based prediction by subsetting the input VCF to the target region before each
bcftools consensuscall.Changes
bcftools view -rbcftools consensusagainst that temporary VCFValidation
pytest -q tests/test_data_process.pypytest -vv -s tests/test_ad_risk.pyImpact
For
tests/test_ad_risk.pywith B200 GPU:1360.82s(0:22:40)163.07s(0:02:43)Fixes #61
Thanks for all the great work on this project!!