otu_cat_sig_script_fix#1
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Improvement in split_libraries_lea_seq.py
Differential abundance
Includes description of BIOM file format support in QIIME. Fixes #1867.
BUG: better error message for missing required headers
make_2d_plots.py now handles relative proportions explained correctly
DOC: updates to 454 overview tutorial
DOC: update parallel QIIME tutorial
removed count column from plot_taxa_summary.py
… better content on this subject that is more actively maintained
… data tutorial so related content can be found in a single place
…o related content can be found in a single place
…f the AWS interface
Later versions are incompatible with capped numpy 1.9.2.
MAINT/TST: dependency version cap; "fix" broken bootstrapped p-value test
Improve error message in parse.py. Closes #2113
DOC: Fix random forest installation command
Modified multiple_split_libraries_fastq.py to filter target files, wi…
…mentation-typos Fix group significance documentation typos
New installation instructions using Conda
Revert "New installation instructions using Conda"
this was written in collaboration with @cuttlefishh.
DOC: updates install instructions to use conda
Update join_paired_ends.py
This address comments from @cuttlefishh in #2166
improve doc for filter_fasta (--valid_states)
Based on @colinbrislawn's work in #2194
DOC/BUG: fix broken BLAST download links
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fixed some bugs in the otu_category_significance.py script