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ENH: allow bowtie2 indexing of FeatureData[Sequence] artifacts

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#154 In bokulich-lab/q2-assembly;

· misialq opened on May 7, 2026

BUG: _assemble_spades coassembly path passes incorrect filename to modify_contig_ids

bugSomething isn't workingSomething isn't working

Status: Open.

#153 In bokulich-lab/q2-assembly;

· adamcantor22 opened on Apr 27, 2026

ENH: introduce support for mapping reads to co-assembled contigs

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#152 In bokulich-lab/q2-assembly;

· misialq opened on Mar 26, 2026

ENH: introduce support for indexing contigs resulting from co-assembly

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#151 In bokulich-lab/q2-assembly;

· misialq opened on Mar 26, 2026

ENH: move coverage calculation with samtools to a separate action

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#132 In bokulich-lab/q2-assembly;

· misialq opened on Sep 15, 2025

ENH: allow mapping reads to individual genes

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#131 In bokulich-lab/q2-assembly;

· misialq opened on Sep 15, 2025

ENH: add parallelization support to evaluate-spades action

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#101 In bokulich-lab/q2-assembly;

· misialq opened on Nov 7, 2024

BUG: MultiMAGSequencesDirFmt does not have a manifest in index_mags

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#66 In bokulich-lab/q2-assembly;

· colinvwood opened on Dec 6, 2023

evaluate-contigs fails on the most recent QUAST version

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#41 In bokulich-lab/q2-assembly;

· misialq opened on Apr 27, 2023

MAINT: update dependencies

maintenance

Status: Open.

#16 In bokulich-lab/q2-assembly;

· misialq opened on Mar 22, 2022