Skip to content
View biomaverick's full-sized avatar
🎯
LOCKED IN
🎯
LOCKED IN

Block or report biomaverick

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
biomaverick/README.md

Bioinformatics Banner

Hi There!, I'm Debojyoti Chatterjee

MSc Bioinformatics student | Exploring data, structure, dynamics and systems at a biological level · Passionate about research collaboration & data-driven discovery

Email LinkedIn


Who Am I?

I am currently pursuing an MSc in Bioinformatics with a strong interest in: Computational Drug Discovery, Molecular Dynamics Simulations, Structural Bioinformatics, Systems Biology & Network Biology. My work primarily focuses on combining computational biology, molecular modelling, and data-driven analysis to understand biological systems and identify novel therapeutic insights. I enjoy developing reproducible computational workflows, bioinformatics pipelines, and research-oriented tools that bridge biological data with meaningful interpretation. I am particularly fascinated by how protein dynamics, signaling networks, and multi-omics interactions contribute to complex disorders such as neurodegenerative diseases and cancer. Outside of research and academics, I enjoy reading books, clicking photos, making videos, and learning instruments.


What do I want to do?

  • Develop reproducible bioinformatics pipelines and computational workflows for analyzing sequence, structure.
  • Apply molecular dynamics simulations, structural bioinformatics, and systems biology approaches to better understand disease mechanisms, protein dynamics, and therapeutic targeting.
  • Contribute toward computational drug discovery and rational therapeutic design, particularly in areas related to neurodegenerative disorders and complex disease biology.
  • Explore the integration of AI/ML with biological modelling and molecular simulations for predictive analysis, hypothesis generation, and data-driven discovery.
  • Promote clarity, reproducibility, collaboration, and open scientific workflows through well-documented code, scalable pipelines, and research-focused development.
  • Continuously grow at the intersection of computational biology, molecular simulation, and systems-level biological analysis while contributing to impactful interdisciplinary research.

⚡ Skills & Tools

Programming & Scripting


Bioinformatics Tools & Databases


Structural Biology Tools


Machine Learning & AI


☁️ Workflow, Cloud & HPC


🧑‍💻 Currently Exploring

  • Advanced Molecular Dynamics & Enhanced Sampling Methods
  • Markov State Models and conformational landscape analysis
  • Gaussian Accelerated Molecular Dynamics
  • Systems Biology & Network-based Disease Modelling
  • Neurodegenerative Disorder Mechanisms and Protein Misfolding
  • AI-driven Drug Discovery & Predictive Modelling
  • High Performance Computing for biomolecular simulations

🧑‍💻 Programming & Scripting

  • Python (Biopython, Matplotlib)
  • R (ggplot2, edgeR, DESeq2)
  • Shell scripting (Bash, Linux environment)
  • Miniconda

🧬 Bioinformatics Tools & Databases

  • NCBI (BLAST, GEO, SRA)
  • UniProt, PDB, Pfam, PDBsum
  • Ensembl Genome Browser
  • ExPASy suite (ProtParam, Translate, SwissSidechain)
  • STRING (protein-protein interactions)

🧩 Structural Biology Tools

  • PyMOL, Chimera, ChimeraX
  • AlphaFold DB
  • Modeller
  • SWISS-MODEL
  • PyRobetta (Baker Lab)
  • SWISS-MODEL Structure Assessment
  • PROCHECK

🤖 Machine Learning & AI

  • TensorFlow
  • Keras
  • PyTorch
  • Scikit-learn
  • Pandas
  • NumPy

☁️ Cloud & HPC

  • Google Colab / Kaggle notebooks
  • Cluster computing basics (batch job submission, Linux servers)
  • Git & GitHub (version control, project hosting)

☁️ Open To

  • Research collaborations
  • Computational biology projects
  • Bioinformatics tool development
  • Structural biology & MD simulation projects
  • Open-source scientific software contributions

“Study hard what interests you the most in the most undisciplined, irreverent and original manner possible.” — Richard Feynman

Popular repositories Loading

  1. CURIO CURIO Public

    CURIO is an interactive bioinformatics platform that unifies access to major biological databases including UniProt, PubMed, NCBI Gene, Reactome, KEGG, STRING, and Protein Structures. It provides b…

    Python 1

  2. biomaverick biomaverick Public