MSc Bioinformatics student | Exploring data, structure, dynamics and systems at a biological level · Passionate about research collaboration & data-driven discovery
I am currently pursuing an MSc in Bioinformatics with a strong interest in: Computational Drug Discovery, Molecular Dynamics Simulations, Structural Bioinformatics, Systems Biology & Network Biology. My work primarily focuses on combining computational biology, molecular modelling, and data-driven analysis to understand biological systems and identify novel therapeutic insights. I enjoy developing reproducible computational workflows, bioinformatics pipelines, and research-oriented tools that bridge biological data with meaningful interpretation. I am particularly fascinated by how protein dynamics, signaling networks, and multi-omics interactions contribute to complex disorders such as neurodegenerative diseases and cancer. Outside of research and academics, I enjoy reading books, clicking photos, making videos, and learning instruments.
- Develop reproducible bioinformatics pipelines and computational workflows for analyzing sequence, structure.
- Apply molecular dynamics simulations, structural bioinformatics, and systems biology approaches to better understand disease mechanisms, protein dynamics, and therapeutic targeting.
- Contribute toward computational drug discovery and rational therapeutic design, particularly in areas related to neurodegenerative disorders and complex disease biology.
- Explore the integration of AI/ML with biological modelling and molecular simulations for predictive analysis, hypothesis generation, and data-driven discovery.
- Promote clarity, reproducibility, collaboration, and open scientific workflows through well-documented code, scalable pipelines, and research-focused development.
- Continuously grow at the intersection of computational biology, molecular simulation, and systems-level biological analysis while contributing to impactful interdisciplinary research.
- Advanced Molecular Dynamics & Enhanced Sampling Methods
- Markov State Models and conformational landscape analysis
- Gaussian Accelerated Molecular Dynamics
- Systems Biology & Network-based Disease Modelling
- Neurodegenerative Disorder Mechanisms and Protein Misfolding
- AI-driven Drug Discovery & Predictive Modelling
- High Performance Computing for biomolecular simulations
- Python (Biopython, Matplotlib)
- R (ggplot2, edgeR, DESeq2)
- Shell scripting (Bash, Linux environment)
- Miniconda
- NCBI (BLAST, GEO, SRA)
- UniProt, PDB, Pfam, PDBsum
- Ensembl Genome Browser
- ExPASy suite (ProtParam, Translate, SwissSidechain)
- STRING (protein-protein interactions)
- PyMOL, Chimera, ChimeraX
- AlphaFold DB
- Modeller
- SWISS-MODEL
- PyRobetta (Baker Lab)
- SWISS-MODEL Structure Assessment
- PROCHECK
- TensorFlow
- Keras
- PyTorch
- Scikit-learn
- Pandas
- NumPy
- Google Colab / Kaggle notebooks
- Cluster computing basics (batch job submission, Linux servers)
- Git & GitHub (version control, project hosting)
- Research collaborations
- Computational biology projects
- Bioinformatics tool development
- Structural biology & MD simulation projects
- Open-source scientific software contributions
