Hopefully it's ok to put 2 in 1 comment, but I suspect they are brief.
My first query is if the input file format is strict or if it can function by being given assembly files rather than the raw sequence reads. For the analysis I planned to do, genome assembly fasta files are available in databases, but not the raw reads that I can tell. If it simply won't work without a set of paired reads for each sample then I just want to confirm before trying to fit a square shaped object into a triangular space.
The second query is if the workflow can be configured to only include certain steps - or rather if it would take excessive editing on my part to just use the "Post-GWAS" tools instead of the whole thing. I have limited experience with these sorts of tools - so any indication of how heavy a task that is would be helpful.
Thanks,
Doyle
Hopefully it's ok to put 2 in 1 comment, but I suspect they are brief.
My first query is if the input file format is strict or if it can function by being given assembly files rather than the raw sequence reads. For the analysis I planned to do, genome assembly fasta files are available in databases, but not the raw reads that I can tell. If it simply won't work without a set of paired reads for each sample then I just want to confirm before trying to fit a square shaped object into a triangular space.
The second query is if the workflow can be configured to only include certain steps - or rather if it would take excessive editing on my part to just use the "Post-GWAS" tools instead of the whole thing. I have limited experience with these sorts of tools - so any indication of how heavy a task that is would be helpful.
Thanks,
Doyle