Issues

• Trouble recreating zero shot results on protein gym

  ai4protein/VenusREM#23 · Filter by author morgankohler opened on Apr 12, 2026
  1

• How do you handle protein sequences longer than context length?

  ai4protein/VenusREM#22 · Filter by author morgankohler opened on Mar 29, 2026
  1

• Is it possible to assess multi-mutant protein fitness in VenusREM?

  ai4protein/VenusREM#20 · Filter by author batch2k opened on Oct 24, 2025
  2

• about reformat ColabFold alignment .a3m file

  ai4protein/VenusREM#19 · Filter by author TBUJUE opened on Oct 14, 2025
  1

• The EVcouplings has generated a "failed" file

  ai4protein/VenusREM#18 · Filter by author zhaoyang163SJTU opened on Sep 28, 2025
  11

• How to calculate the protein sequence containing three chains ?

  ai4protein/VenusREM#17 · Filter by author BEGGY99 opened on Sep 5, 2025
  1

• NameError: name 'model_out_name' is not defined

  ai4protein/VenusREM#15 · Filter by author jiaxiaolei opened on Jul 23, 2025

• get_sav.py gives 0 DMS_score

  ai4protein/VenusREM#13 · Filter by author SOMT1997 opened on Jun 29, 2025
  3

• is VenusREM good at Supervised task?

  ai4protein/VenusREM#10 · Filter by author bzhousd opened on Jun 2, 2025
  9

• 请问您课题组发布的ProSST,ProTSSN venusPLM, venusREM都可进行突变任务吗？或者您有更适合做突变任务的模型推荐吗？

  ai4protein/VenusREM#9 · Filter by author MADtm9527 opened on Apr 19, 2025
  3

• Is VenusREM used for evaluation? Can we make predictions without mutation information

  ai4protein/VenusREM#8 · Filter by author lsy-199612 opened on Mar 28, 2025
  10

• Can VenusREM be used to predict mutational effect for homodimer proteins?

  ai4protein/VenusREM#7 · Filter by author Yang-Wang-2020 opened on Feb 26, 2025
  1

• embedding

  ai4protein/VenusREM#6 · Filter by author Fakerwws opened on Jan 6, 2025
  1

• how to use evcouplings

  ai4protein/VenusREM#5 · Filter by author yzcha0 opened on Nov 15, 2024
  4

• How to predict own protein

  ai4protein/VenusREM#3 · Filter by author 123wnk opened on Nov 8, 2024
  1

• conda conflicts

  ai4protein/VenusREM#1 · Filter by author wensm77 opened on Oct 30, 2024
  10