Systems Biology for Oncology

Popular repositories Loading

1. SPoTLIghT SPoTLIghT Public

   SPoTLIghT, a computational framework to extract interpretable features of the spatial distribution of multiple cell types by combining unannotated pathology images with bulk transcriptomics.

   Python 9

2. RaCInG RaCInG Public

   The random graph model to infer cell-cell communication networks based on bulk RNA-seq data. Contains the code used for the "Mathematically mapping the network of cells in the tumor microenvironmen…

   HTML 7 2

3. spatial_features_manuscript spatial_features_manuscript Public

   Code used in the paper 'Integrating histopathology and transcriptomics for spatial tumor microenvironment profiling in a melanoma case study' by Lapuente-Santana, Kant & Eduati.

   HTML 3

4. PCABM_ADT PCABM_ADT Public

   MATLAB 2

5. Lungmarkerstudy_diagnosticalgorithm Lungmarkerstudy_diagnosticalgorithm Public

   Code used in the paper 'Liquid biopsy-based decision support algorithms for diagnosis and subtyping of lung cancer' by Visser et al.

   Python 1 3

6. ABM_prostate_cancer_development ABM_prostate_cancer_development Public

   Code used in the paper "Multicellular agent-based model of prostate tumor onset and development" by Passier et al.

   MATLAB 1