Fix ANKH tokenizer to load from checkpoint hub id#31
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FAST_ANKH_ENCODER always attached ElnaggarLab/ankh-base, so ANKH3 checkpoints (256-token vocab) were tokenized with the wrong ids in embed.py. Load from config._name_or_path (same pattern as DPLM) with ankh-base fallback for bare configs. Add slow tests that fast tokenizer ids match the official repo for ANKH_base, ANKH3_large, and ANKH3_xl. Co-authored-by: Cursor <cursoragent@cursor.com>
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FAST_ANKH_ENCODER always attached ElnaggarLab/ankh-base, so ANKH3 checkpoints (256-token vocab) were tokenized with the wrong ids in embed.py. Load from config._name_or_path (same pattern as DPLM) with ankh-base fallback for bare configs.
Add slow tests that fast tokenizer ids match the official repo for ANKH_base, ANKH3_large, and ANKH3_xl.
Summary
FAST_ANKH_ENCODERno longer hardcodesElnaggarLab/ankh-base; it loads the tokenizer fromconfig._name_or_path(e.g.Synthyra/ANKH3_large), matching the checkpoint vocab.embed.pyfor ANKH3 large/XL.Hub follow-up
After merge, re-push
modeling_ankh.pyto Synthyra ANKH checkpoints (e.g. viaget_weights.py) sotrust_remote_code=Trueusers pick up the fix without a local checkout.Test plan
pytest testing/test_ankh_tokenizer.py -v(Docker, 6 passed)