Analysis of genomes from sorted macro- and micronucleus populations from the ciliate Mesodinium rubrum.
Uses genome assemblies previously assembled by pipeline mrub-sorted-asm.
- Predict IESs with BleTIES MILRAA
- Mask low complexity repeats with TRF
- Identify interspersed repeats with RepeatModeler/RepeatMasker
The pipeline uses ParaFly and trf_utils as Git submodules. When cloning the
repository, use the --recurse-submodules option to fetch the submodule code
too.