v2.1.0

• Allow execution with multiple cluster size and target proportion thresholds.
• Add field in summary JSON.
• Update R version for reports.
• Minor fixes for empty results.

Full Changelog: v2.0.0...v2.1.0

v2.0.0

• Find clusters using tcfinder v1.0.0 (source), significantly improving computation speed.
• Support Snakemake 8.
• Add transmission fitness estimation.
• Add default workflow profiles for SLURM execution.
• Add results visualization rules.
• Extend workflow documentation.

Full Changelog: v1.0.0...v2.0.0

v1.0.0

v1.0.0