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Releases: PathoGenOmics-Lab/fstic

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First Release: Version 1.0.0 🎉

First Release: Version 1.0.0 🎉 Latest
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@Paururo Paururo released this 12 Aug 15:37
v1.0.0
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We are pleased to announce the first public release of fstic, a high-performance, Rust-based command-line tool for computing pairwise genetic distances from variant data.
This version provides a complete, production-ready implementation with multi-core parallelism and extensive filtering options.

✨ Key Features

  1. Multiple Distance Metrics: FST, GST, Jost’s D, Reynolds, Nei, Cavalli-Sforza chord, Rogers, and Bray-Curtis.
  2. Flexible Input: Accepts single-sample VCFs or pre-processed allele-frequency tables (.csv, .tsv, .tab), with support for file lists.
  3. Smart Filtering: Configurable thresholds for depth, allele frequency, and allele counts.
  4. Configurable Output: Optional normalization by number of loci (--normalize) and clear, N×N distance matrices.
  5. Optimized for Speed: Fully parallelized using all available CPU cores (customizable with --workers).
  6. Transparent Reporting: Live progress, ETA, and detailed logs of applied filters.

Full Changelog: https://github.com/PathoGenOmics-Lab/fstic/commits/v1.0.0

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