The goal of barbieQ is to analyse barcode count data generated from cell clonal tracking (i.e., lineage tracing) experiments, supporting barcode count data preprocessing, statistical testing, and visualization.
You can install the development version of barbieQ from GitHub:
devtools::install_github("Oshlack/barbieQ")Alternatively, you can install the stable version of barbieQ from BioConductor:
BiocManager::install("barbieQ")Once installed the best place to get started is the vignette. For most users the most convenient way to access this is online here.
Alternatively, if you choose to build the vignette, you can load barbieQ, then browse the vignettes:
library(barbieQ)
browseVignettes("barbieQ")We are currently writing a paper to introduce the methods implemented in barbieQ. We will update this part once it’s available.