NanoString Technologies, Inc.
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Repositories
- CosMx-Analysis-Scratch-Space Public
This repository is an exploratory resource to accelerate opensource analysis of CosMx® Spatial Molecular Imager (SMI) data. Contained here are and writeups and vignettes addressing a variety of topics discussed when analyzing single-cell spatial data.
- FastReseg Public
FastReseg for detection and correction of cell segmentation error based on spatial profile of transcripts.
- GeoDiff Public
GeoDiff, an R package for count generating models for analyzing Geomx RNA data. Note that this version of the package is still under development, undergoing submission process to Bioconductor 3.14 release and still needs to complete NanoString internal verification process.
- CosMxWTx_BreastCancerAnalysis Public
A repository to contain code relevant to the CosMx WTx Breast Cancer manuscript
- SpatialDecon Public
The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This algorithm also works in bulk expression profiling data.)
- BrowserVegaLite Public
- NanoStringNCTools Public
Tools for NanoString Technologies nCounter Technology for reading RCC files into an ExpressionSet derived object, QC and normalization.
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