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Pull requests: NVIDIA-BioNeMo/bionemo-recipes

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Pull requests list

Update mixtral-recipe-te with new results, detailed benchmark script
#1692 opened Jul 24, 2026 by pstjohn Collaborator Loading…
8
Bump setuptools from 79.0.1 to 83.0.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1691 opened Jul 22, 2026 by dependabot Bot Loading…
2
Bump pillow from 11.3.0 to 12.3.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1690 opened Jul 21, 2026 by dependabot Bot Loading…
2
Add HuggingFace naive-pipeline-parallel baseline for Mixtral-8x7B benchmarks
#1689 opened Jul 20, 2026 by faradawn Loading…
2
Fix Evo2TaxonomyLineage.kingdom -> domain rename in docs
#1688 opened Jul 19, 2026 by jannis-baum Contributor Loading…
5 of 9 tasks
2
Bump torch from 2.9.1 to 2.13.0 in /interpretability/sparse_autoencoders dependencies Pull requests that update a dependency file python:uv Pull requests that update python:uv code
#1687 opened Jul 17, 2026 by dependabot Bot Loading…
2
Bump sh from 2.2.2 to 2.2.4 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1686 opened Jul 17, 2026 by dependabot Bot Loading…
2
ci(interp): test the shared sae library, not just the recipes
#1685 opened Jul 14, 2026 by polinabinder1 Collaborator • Draft
2
Bump transformers from 4.51.3 to 5.5.0 in /models/geneformer dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1684 opened Jul 14, 2026 by dependabot Bot Loading…
2
Bump transformers from 4.56.2 to 5.5.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1683 opened Jul 13, 2026 by dependabot Bot Loading…
2
feat(recipes): add evo2_megatron_quant — INT8 weight compression + ModelOpt PTQ harness
#1682 opened Jul 12, 2026 by huthvincent • Draft
3 of 5 tasks
28
Bump mistune from 3.1.3 to 3.3.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1680 opened Jul 10, 2026 by dependabot Bot Loading…
2
Bump soupsieve from 2.7 to 2.8.4 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1677 opened Jul 9, 2026 by dependabot Bot Loading…
2
[TEST — DO NOT MERGE] verify #1667 interp GPU lane runs on the #1622 recipe
#1670 opened Jul 1, 2026 by polinabinder1 Collaborator • Draft
6
feat(evo2-sae): streaming smoke test (producer/consumer) + Lepton convergence config
#1668 opened Jun 30, 2026 by polinabinder1 Collaborator Loading…
18
add mike build instructions
#1666 opened Jun 29, 2026 by pstjohn Collaborator Loading…
1
support lepton launching + add train stream script for esm2
#1663 opened Jun 24, 2026 by jwilber Collaborator Loading…
@jwilber
7
rename framework to recipes
#1662 opened Jun 24, 2026 by pstjohn Collaborator Loading…
2
fix: update jupyterlab and jupyterlab_server to fix dependabot conflict in codonfm_ptl_te
#1658 opened Jun 21, 2026 by svc-bionemo Collaborator Loading…
2
Bump jupyterlab from 4.4.5 to 4.5.9 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1657 opened Jun 20, 2026 by dependabot Bot Loading…
2
Bump msgpack from 1.1.1 to 1.2.1 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1656 opened Jun 20, 2026 by dependabot Bot Loading…
2
Bump jupyter-server from 2.16.0 to 2.20.0 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1655 opened Jun 18, 2026 by dependabot Bot Loading…
2
docs: replace obsolete --experiment-dir with --result-dir in SLURM guide (#1128)
#1654 opened Jun 18, 2026 by rtmalikian Loading…
1
2
Bump starlette from 0.48.0 to 1.3.1 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1651 opened Jun 16, 2026 by dependabot Bot Loading…
2
Bump tornado from 6.5.1 to 6.5.7 in /recipes/codonfm_ptl_te dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1650 opened Jun 16, 2026 by dependabot Bot Loading…
2
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