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MPNNStep_stage2 使用stage1 的mpnn_pdb中pdb导致fix位置为ALA

Status: Open.

#31 In Mingchenchen/PPIFlow;

· contestq opened on May 27, 2026

errors when running example tasks

Status: Open.

#30 In Mingchenchen/PPIFlow;

· alexie2001xcc-dev opened on May 26, 2026

New Version Updated

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#29 In Mingchenchen/PPIFlow;

· Mingchenchen opened on Apr 16, 2026

Hydrophobic biasing

Status: Open.

#27 In Mingchenchen/PPIFlow;

· gezmi opened on Mar 29, 2026

Binder design with motif scaffolding

Status: Open.

#26 In Mingchenchen/PPIFlow;

· gezmi opened on Mar 10, 2026

Clarify AF3 refold settings in paper/notebook: MSA usage and template usage (VHH/mAb vs de novo binders)

Status: Open.

#24 In Mingchenchen/PPIFlow;

· cytokineking opened on Feb 9, 2026

Missing external deps + incomplete env make repo hard to reproduce

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

questionFurther information is requestedFurther information is requested

Status: Open.

#11 In Mingchenchen/PPIFlow;

· cytokineking opened on Jan 23, 2026

setup for PyTorch 2.9.1 and Blackwell GPUs

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#4 In Mingchenchen/PPIFlow;

· 21tesla opened on Jan 21, 2026