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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet nnUNet Public

    Python 8.2k 2.3k

  2. batchgenerators batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.2k 229

  3. trixi trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 226 21

  4. TractSeg TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 257 80

  5. basic_unet_example basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 152 42

  6. nnDetection nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 634 120

Repositories

Showing 10 of 119 repositories
  • napari-mlarray Public

    A reader/writer Napari plugin for MLArray images

    MIC-DKFZ/napari-mlarray’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Apr 1, 2026
  • mlarray Public

    Array format specialized for Machine Learning with Blosc2 backend and standardized metadata.

    MIC-DKFZ/mlarray’s past year of commit activity
    Python 20 MIT 0 0 0 Updated Apr 1, 2026
  • LesionLocator Public

    LesionLocator is a framework for zero-shot lesion segmentation and longitudinal tumor tracking in 3D full-body imaging.

    MIC-DKFZ/LesionLocator’s past year of commit activity
    Python 101 GPL-3.0 9 3 0 Updated Apr 1, 2026
  • LongiSeg Public
    MIC-DKFZ/LongiSeg’s past year of commit activity
    Python 32 Apache-2.0 4 7 0 Updated Mar 31, 2026
  • napari-layer-statistics Public

    Compact layer inspector for napari: fast statistics, editable geometry/camera fields, and clipboard-friendly summaries in one widget.

    MIC-DKFZ/napari-layer-statistics’s past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Mar 26, 2026
  • nnUNet Public
    MIC-DKFZ/nnUNet’s past year of commit activity
    Python 8,223 Apache-2.0 2,339 338 (1 issue needs help) 29 Updated Mar 26, 2026
  • VoxTell Public

    Free-Text Promptable Universal 3D Medical Image Segmentation

    MIC-DKFZ/VoxTell’s past year of commit activity
    Python 174 Apache-2.0 16 4 0 Updated Mar 25, 2026
  • batchgeneratorsv2 Public
    MIC-DKFZ/batchgeneratorsv2’s past year of commit activity
    Python 29 Apache-2.0 18 0 4 Updated Mar 20, 2026
  • dynamic-network-architectures Public
    MIC-DKFZ/dynamic-network-architectures’s past year of commit activity
    Python 154 Apache-2.0 58 5 3 Updated Mar 20, 2026
  • napari-nninteractive Public

    nnInteractive plugin for Napari - nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    MIC-DKFZ/napari-nninteractive’s past year of commit activity
    Python 111 Apache-2.0 15 11 3 Updated Mar 17, 2026
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