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Fix model size mismatch on restart #9

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Merged
michaelmckinsey1 merged 3 commits into from
Jan 29, 2026
Merged

Fix model size mismatch on restart #9

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79712b0
fix cli bug: must recalculate unet_layers in CLI since problem_scale …
Jan 29, 2026
c4042e1
whitespace
Jan 29, 2026
6d1b136
ruff
Jan 29, 2026
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18 changes: 18 additions & 0 deletions ScaFFold/cli.py
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Original file line number Diff line number Diff line change
Expand Up @@ -177,6 +177,24 @@ def main():
print(f"Overriding '{key}={combined_config[key]}' with '{key}={value}'")
combined_config[key] = value

# Recalculate unet_layers to capture any CLI overrides
combined_config["unet_layers"] = (
combined_config["problem_scale"]
- combined_config["unet_bottleneck_dim"]
+ 1
)

# Resolve paths to absolute, matching Config() behavior
if "base_run_dir" in combined_config and combined_config["base_run_dir"]:
combined_config["base_run_dir"] = str(
Path(combined_config["base_run_dir"]).resolve()
)

if "dataset_dir" in combined_config and combined_config["dataset_dir"]:
combined_config["dataset_dir"] = str(
Path(combined_config["dataset_dir"]).resolve()
)

# Calculate these variables after override
combined_config["vol_size"] = pow(2, combined_config["problem_scale"])
combined_config["point_num"] = int(combined_config["vol_size"] ** 3 / 256)
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