tripyrun/papermill: Ignore TemplateNotebook Kernel#217
Merged
Conversation
Use default Kernel "python3" instead. This should fix issues like `Unexpected Error: No such kernel named py39_new` when running tripyrun. Error was raised as papermill by default tries executing the notebooks using the kernel specified in the notebook metadata. This fix tells papermill to use the Kernel called "python3" and ignore notebook metadata. Details: Once any conda environment is activated it seems that the kernel "python3" is associated with the activated conda environment independent of the name of the conda environment. Only if no environment is activated "python3" is the name of the kernel associated with the default e.g. Levante python env. This can be verified by running `jupyter kernelspec list` Only tested on Levante with python 3.12
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Use default Kernel "python3" instead.
This should fix issues like
Unexpected Error: No such kernel named py39_newwhen runningtripyrun.Error was raised as papermill by default tries executing the notebooks using the kernel specified in the notebook metadata.
This fix tells papermill to use the Kernel called "python3" and ignore notebook metadata.
Details:
Once any conda environment is activated it seems that the kernel "python3" is associated with the activated conda environment independent of the name of the conda environment.
Only if no environment is activated "python3" is the name of the kernel associated with the default e.g. Levante python env.
This can be verified by running
jupyter kernelspec list(before/after activating conda env)Only tested on Levante with python 3.12